Miyakogusa Predicted Gene

Lj2g3v1984620.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C0JP22_LOTJA 577 77.5 77.5 (tr|C0JP22) Putative basic helix-loop-helix protein BHLH17 OS=Lotus japonicus PE=4 SV=1
TAIR_pep AT4G37850.1 157 36.7 54.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr4:17796362-17797647 REVERSE LENGTH=328
Medicago Medtr5g014520.1 281 49.6 59.6 | basic helix loop helix (bHLH) DNA-binding family protein | HC | chr5:4891290-4895606 | 20130731
Soybean Glyma05g23530.1 305 48.9 56.2  
LJGI gnl|LJGI|TC67128 2183 100.0 100.0 weakly similar to UniRef100_A7R3V3 Cluster: Chromosome chr7 scaffold_572, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_572, whole genome shotgun sequence - Vitis vinifera (Grape), partial (71%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1984620.1 length: 366 aa.
IPR011598 Myc-type, basic helix-loop-helix (bHLH) domain
method AccNumber shortName E-value location
Molecular Function GO:0046983 protein dimerization activity    
Gene3D G3DSA:4.10.280.10 no description 8.3e-14 187-246
HMMPfam PF00010 HLH 1.7e-08 187-232
HMMSmart SM00353 helix 8e-12 189-238
ProfileScan PS50888 BHLH 14.811 183-232
superfamily SSF47459 HLH, 3.5e-16 181-265
no_ID  
Coil coil coiled-coil NA 229-250
HMMPanther PTHR23042 CIRCADIAN 1.1e-21 183-364
HMMPanther PTHR23042:SF23 SUBFAMILY 1.1e-21 183-364
Seg seg seg NA 53-78
107-117
203-210
229-241
260-271
Wolf-PSORT
Lj2g3v1984620.1	nucl 12, cyto 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1984620.1