Miyakogusa Predicted Gene

Lj2g3v1925750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LN56_SOYBN 845 79.2 85.6 (tr|K7LN56) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G67320.1 563 74.9 82.8 | Symbols: HOS15 | WD-40 repeat family protein | chr5:26857268-26860974 FORWARD LENGTH=613
Medicago Medtr5g016350.1 857 77.8 84.3 | transducin family protein/WD-40 repeat protein | HC | chr5:5861710-5850637 | 20130731
Soybean Glyma11g05520.2 845 79.2 85.6  
LJGI gnl|LJGI|TC57235 1122 100.0 100.0 similar to UniRef100_A7PLK5 Cluster: Chromosome chr7 scaffold_20, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_20, whole genome shotgun sequence - Vitis vinifera (Grape), partial (62%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1925750.1 length: 515 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 1.8e-12 203-237
269-296
300-338
385-421
427-472
476-514
HMMSmart SM00320 WD40 9.6e-13 199-238
254-297
299-338
341-379
382-421
424-472
475-514
ProfileScan PS50082 WD_REPEATS_2 18.596 206-239
265-296
306-347
389-430
431-481
482-515
IPR006594 LisH dimerisation motif
Molecular Function GO:0005515 protein binding    
HMMSmart SM00667 Lissencephaly 0.00025 5-37
ProfileScan PS50896 LISH 9.783 5-37
IPR013720 LisH dimerisation motif, subgroup
HMMPfam PF08513 LisH 7.1e-10 8-33
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.9e-84 203-515
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 57.238 206-515
superfamily SSF50978 WD40 9.5e-79 198-514
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 325-339
459-473
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.3e-07 225-239
459-473
501-515
no_ID  
Coil coil coiled-coil NA 91-116
124-145
HMMPanther PTHR22846 WD40 2.8e-276 3-514
HMMPanther PTHR22846:SF2 TRANSDUCIN 2.8e-276 3-514
Seg seg seg NA 123-144
Wolf-PSORT
Lj2g3v1925750.1	nucl 11, chlo 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1925750.1