Miyakogusa Predicted Gene

Lj2g3v1834010.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1J946_SOYBN 876 75.5 82.7 (tr|I1J946) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT4G37190.1 604 53.0 70.1 | Symbols: | LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). | chr4:17507155-17509512 FORWARD LENGTH=562

Medicago Medtr5g017970.1 810 69.1 79.6 | misato segment II myosin-like domain protein | HC | chr5:6670233-6662266 | 20130731

Soybean Glyma01g39050.1 876 75.5 82.7

LJGI gnl|LJGI|TC60421 1053 99.4 99.4 weakly similar to UniRef100_A7QYF0 Cluster: Chromosome undetermined scaffold_245, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_245, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1834010.1 length: 570 aa.

IPR003008 Tubulin/FtsZ, GTPase domain

method AccNumber shortName E-value location

Cellular Component GO:0043234 protein complex

Biological Process GO:0051258 protein polymerization

Gene3D G3DSA:3.40.50.1440 no description 2.2e-24 164-335

superfamily SSF52490 Tubulin 2.4e-36 1-336

IPR019605 Misato Segment II, myosin-like

HMMPfam PF10644 Misat_Myo_SegII 6.8e-29 1-105

no_ID

Coil coil coiled-coil NA 112-133

HMMPanther PTHR13391 TUBULIN-RELATED 1.1e-123 1-570

Seg seg seg NA 119-131
456-469
542-555

Wolf-PSORT

Lj2g3v1834010.1 nucl 6, cyto 6, cyto_nucl 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1834010.1 Not targeted -38.323 -0.365 -1.440 49.45% -36.518

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1J946_SOYBN	876	75.5	82.7	(tr\|I1J946) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT4G37190.1	604	53.0	70.1	\| Symbols: \| LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin, autoregulation binding site (InterPro:IPR013838), Misato Segment II, myosin-like (InterPro:IPR019605), Tubulin/FtsZ, N-terminal (InterPro:IPR019746); Has 345 Blast hits to 341 proteins in 161 species: Archae - 0; Bacteria - 0; Metazoa - 131; Fungi - 140; Plants - 55; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink). \| chr4:17507155-17509512 FORWARD LENGTH=562
Medicago	Medtr5g017970.1	810	69.1	79.6	\| misato segment II myosin-like domain protein \| HC \| chr5:6670233-6662266 \| 20130731
Soybean	Glyma01g39050.1	876	75.5	82.7
LJGI	gnl\|LJGI\|TC60421	1053	99.4	99.4	weakly similar to UniRef100_A7QYF0 Cluster: Chromosome undetermined scaffold_245, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_245, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)

IPR003008	Tubulin/FtsZ, GTPase domain
Lj2g3v1834010.1				length: 570 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0043234	protein complex
Biological Process	GO:0051258	protein polymerization
Gene3D	G3DSA:3.40.50.1440	no description	2.2e-24	164-335
superfamily	SSF52490	Tubulin	2.4e-36	1-336
IPR019605	Misato Segment II, myosin-like
HMMPfam	PF10644	Misat_Myo_SegII	6.8e-29	1-105
no_ID
Coil	coil	coiled-coil	NA	112-133
HMMPanther	PTHR13391	TUBULIN-RELATED	1.1e-123	1-570
Seg	seg	seg	NA	119-131 456-469 542-555