Miyakogusa Predicted Gene

Lj2g3v1758390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K087_MEDTR 90.9 57.1 75.7 (tr|G7K087) DNA-directed RNA polymerases I, II, and III subunit RPABC5 OS=Medicago truncatula GN=MTR_5g034040 PE=3 SV=1
TAIR_pep AT1G61700.1 84.0 51.4 71.4 | Symbols: | RNA polymerases N / 8 kDa subunit | chr1:22787105-22788112 FORWARD LENGTH=71
Medicago Medtr5g034040.1 90.9 57.1 75.7 | DNA-directed RNA polymerase II 8.2 kDa protein | LC | chr5:14712702-14705432 | 20130731
Soybean Glyma06g10100.4 84.7 54.3 70.0  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1758390.1 length: 99 aa.
IPR000268 DNA-directed RNA polymerase, subunit N/Rpb10
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
BlastProDom PD006539 Q6BHF3_DEBHA_Q6BHF3; 2e-09 8-63
HMMPanther PTHR23413:SF2 DNA-DIRECTED 4.9e-22 1-63
HMMPfam PF01194 RNA_pol_N 4.8e-25 1-57
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 6.1e-28 1-62
IPR020789 RNA polymerases, subunit N, zinc binding site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS01112 RNA_POL_N_8KD NA 1-10
IPR023580 RNA polymerase subunit RPB10
superfamily SSF46924 RNA 4.2e-22 1-63
no_ID  
HMMPanther PTHR23413 60S 4.9e-22 1-63
Seg seg seg NA 71-88
Wolf-PSORT
Lj2g3v1758390.1	nucl 4, mito 3, nucl_plas 3, chlo 2, plas 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1758390.1