Miyakogusa Predicted Gene
- Lj2g3v1705490.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JG14_SOYBN |
328 |
79.1 |
89.1 |
(tr|I1JG14) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G04600.1 |
281 |
67.9 |
83.2 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:1323700-1325486 FORWARD LENGTH=222 |
| Medicago |
Medtr1g108290.1 |
297 |
77.8 |
86.4 |
| MKI67 interacting nucleolar phosphoprotein | HC | chr1:48970128-48966656 | 20130731 |
| Soybean |
Glyma02g29190.2 |
328 |
79.1 |
89.1 |
|
| LJGI |
gnl|LJGI|TC57778 |
1247 |
99.8 |
99.8 |
similar to UniRef100_Q2VCH8 Cluster: RNA binding protein-like protein; n=1; Solanum tuberosum|Rep: RNA binding protein-like protein - Solanum tuberosum (Potato), partial (82%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1705490.1 |
length: 210 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
8e-15 |
52-116 |
| HMMSmart |
SM00360 |
RNA |
1.6e-18 |
51-124 |
| ProfileScan |
PS50102 |
RRM |
14.863 |
50-128 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
7.2e-19 |
33-128 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
151-172 |
| HMMPanther |
PTHR23365 |
POLY-A |
1e-48 |
27-210 |
| Seg |
seg |
seg |
NA |
1-10 |
| superfamily |
SSF54928 |
RNA-binding |
8e-24 |
9-146 |
- Wolf-PSORT
Lj2g3v1705490.1 nucl 8.5, cyto_nucl 5.5, chlo 2, cyto 1.5, chlo_mito 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1705490.1 |
|