Miyakogusa Predicted Gene

Lj2g3v1647890.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LNM0_SOYBN 1289 82.2 88.8 (tr|K7LNM0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G02750.1 529 40.7 63.6 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:1221116-1223461 REVERSE LENGTH=781
Medicago Medtr5g023040.1 1258 80.6 89.4 | pentatricopeptide (PPR) repeat protein | HC | chr5:9142979-9147043 | 20130731
Soybean Glyma11g08630.1 1062 75.7 83.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1647890.1 length: 767 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.04 99-127
131-154
163-190
193-223
224-249
255-284
286-312
317-346
351-373
410-440
441-470
514-533
614-638
HMMPfam PF12854 PPR_1 7.4e-11 64-94
377-405
HMMPfam PF13041 PPR_2 1.3e-09 541-587
HMMTigr TIGR00756 PPR: 1.2e-06 68-99
99-128
163-192
193-224
255-285
286-318
317-347
379-408
410-441
542-575
ProfileScan PS51375 PPR 7.103 66-100
128-158
101-127
191-225
160-190
253-287
226-252
315-349
288-314
377-411
351-376
412-442
443-473
540-574
509-539
474-508
575-605
611-641
677-707
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.8e-09 42-270
271-461
no_ID  
HMMPanther PTHR24015 FAMILY 5.7e-214 51-742
HMMPanther PTHR24015:SF125SUBFAMILY NOT 5.7e-214 51-742
Seg seg seg NA 479-491
superfamily SSF48452 TPR-like 3.4e-05 293-455
40-153
superfamily SSF81901 HCP-like 0.0007 137-261
Wolf-PSORT
Lj2g3v1647890.1	chlo 9, mito 2, nucl 1, cyto 1, cysk 1, cyto_nucl 1, cyto_mito 1, cysk_nucl 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1647890.1