Miyakogusa Predicted Gene

Lj2g3v1643230.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MQ01_SOYBN 1471 77.6 84.6 (tr|K7MQ01) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G31360.1 308 41.7 58.6 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705
Medicago Medtr3g063040.1 1404 75.4 83.4 | ATP-dependent DNA helicase RecQ | HC | chr3:28524625-28534220 | 20130731
Soybean Glyma18g05570.1 572 88.4 94.7  
LJGI gnl|LJGI|TC73428 1283 100.0 100.0 similar to UniRef100_A7NXX6 Cluster: Chromosome chr6 scaffold_3, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_3, whole genome shotgun sequence - Vitis vinifera (Grape), partial (51%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1643230.2 length: 912 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.4e-18 250-326
HMMSmart SM00490 helicase 7.2e-27 245-326
ProfileScan PS51194 HELICASE_CTER 20.722 216-380
IPR002121 HRDC domain
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
Gene3D G3DSA:1.10.150.80 no description 1.6e-10 547-617
HMMPfam PF00570 HRDC 2.5e-14 546-612
HMMSmart SM00341 Helicase 8e-06 542-622
ProfileScan PS50967 HRDC 18.744 542-622
IPR004589 DNA helicase, ATP-dependent, RecQ type
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 1.6e-150 6-458
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 5.7e-16 534-628
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 3.8e-20 19-178
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 6.5e-45 340-501
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.1e-30 13-208
ProfileScan PS51192 HELICASE_ATP_BIND_1 22.587 25-192
IPR018982 RQC domain
Biological Process GO:0006260 DNA replication    
Biological Process GO:0006281 DNA repair    
Molecular Function GO:0043140 ATP-dependent 3'-5' DNA helicase activity    
HMMPfam PF09382 RQC 2.1e-19 407-500
HMMSmart SM00956 no description 1.2e-21 407-511
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.4e-58 24-343
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.6e-39 3-196
197-339
HMMPanther PTHR13710 DNA 1.1e-249 2-671
HMMPanther PTHR13710:SF11 DNA 1.1e-249 2-671
Seg seg seg NA 24-31
543-559
766-781
superfamily SSF46785 "Winged 1.5e-24 398-499
Wolf-PSORT
Lj2g3v1643230.2	cyto 7, nucl 3, chlo 1, plas 1, vacu 1, cysk 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1643230.2 Not targeted -23.744 -0.834 -1.534 18.58% -21.376