Miyakogusa Predicted Gene

Lj2g3v1550680.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K416_SOYBN 1450 75.2 83.8 (tr|K7K416) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G19220.1 800 47.1 64.3 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:10505266-10508121 REVERSE LENGTH=932
Medicago Medtr5g025580.1 1221 77.5 86.2 | PPR containing plant-like protein | HC | chr5:10385696-10382561 | 20130731
Soybean Glyma01g35700.1 1200 79.2 87.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1550680.1 length: 944 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00012 125-151
154-181
227-250
255-280
330-352
433-453
461-490
564-588
666-690
HMMPfam PF13041 PPR_2 1.2e-09 355-401
764-808
HMMTigr TIGR00756 PPR: 0.0013 358-392
461-490
666-691
764-794
799-833
ProfileScan PS51375 PPR 7.278 121-155
222-256
187-221
356-390
325-355
459-493
428-458
561-591
663-693
632-662
761-795
730-760
695-729
796-831
832-862
898-932
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3e-13 891-920
no_ID  
HMMPanther PTHR24015 FAMILY 1.7e-197 98-941
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.7e-197 98-941
Seg seg seg NA 20-32
119-130
290-302
Wolf-PSORT
Lj2g3v1550680.1	plas 9, chlo 1, nucl 1, mito 1, E.R. 1, pero 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1550680.1 Not targeted -50.863 -1.481 -9.506 75.97% -39.875