Miyakogusa Predicted Gene

Lj2g3v1549970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LF92_SOYBN 1193 83.4 89.3 (tr|K7LF92) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G31360.1 1009 67.7 80.6 | Symbols: RECQL2, ATRECQ2, MED34 | RECQ helicase L2 | chr1:11232422-11237412 FORWARD LENGTH=705
Medicago Medtr5g026590.1 1127 78.2 85.0 | ATP-dependent DNA helicase RecQ family protein | HC | chr5:10949368-10935495 | 20130731
Soybean Glyma09g34860.1 1177 82.7 88.5  
LJGI gnl|LJGI|FS318309 1423 99.9 99.9 similar to UniRef100_A7QW06 Cluster: Chromosome chr2 scaffold_196, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_196, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1549970.1 length: 708 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.1e-17 333-410
HMMSmart SM00490 helicase 5.2e-27 329-410
ProfileScan PS51194 HELICASE_CTER 20.423 300-449
IPR002121 HRDC domain
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF00570 HRDC 8e-07 609-668
ProfileScan PS50967 HRDC 11.953 600-679
IPR004589 DNA helicase, ATP-dependent, RecQ type
Biological Process GO:0006310 DNA recombination    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMTigr TIGR00614 recQ_fam: 8e-160 85-505
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 2.9e-06 601-676
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.2e-17 96-262
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 3.8e-25 434-587
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 4e-25 88-291
ProfileScan PS51192 HELICASE_ATP_BIND_1 23.694 100-275
IPR018982 RQC domain
Biological Process GO:0006260 DNA replication    
Biological Process GO:0006281 DNA repair    
Molecular Function GO:0043140 ATP-dependent 3'-5' DNA helicase activity    
HMMPfam PF09382 RQC 6.4e-07 487-581
HMMSmart SM00956 no description 0.0023 487-584
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2.7e-58 130-431
no_ID  
Coil coil coiled-coil NA 6-41
Gene3D G3DSA:3.40.50.300 no description 5.1e-52 85-278
280-426
HMMPanther PTHR13710 DNA 0 1-669
HMMPanther PTHR13710:SF35 PREDICTED 0 1-669
Seg seg seg NA 532-550
606-617
Wolf-PSORT
Lj2g3v1549970.1	nucl 7, cyto 4, extr 1, vacu 1, E.R. 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1549970.1