Miyakogusa Predicted Gene

Lj2g3v1549640.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3RZV1_LOTJA 165 69.3 69.3 (tr|I3RZV1) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G51940.1 148 62.5 68.0 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase Rpb6 | chr5:21104679-21105796 FORWARD LENGTH=144
Medicago Medtr7g092450.1 153 64.1 68.0 | DNA-directed RNA polymerase I, II | HC | chr7:36632357-36635472 | 20130731
Soybean Glyma20g29520.1 157 66.1 68.5  
LJGI gnl|LJGI|TC61904 755 100.0 100.0 homologue to UniRef100_A2Q3E0 Cluster: DNA-directed RNA polymerase, 14 to 18 kDa subunit; n=1; Medicago truncatula|Rep: DNA-directed RNA polymerase, 14 to 18 kDa subunit - Medicago truncatula (Barrel medic), partial (91%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1549640.1 length: 127 aa.
IPR006110 RNA polymerase, subunit omega/K/RPABC2
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HMMPfam PF01192 RNA_pol_Rpb6 4.8e-23 59-114
superfamily SSF63562 RPB6/omega 6.9e-41 1-127
IPR006111 DNA-directed RNA polymerase, subunit K/Rpb6
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
HAMAP MF_00192 RNApol_arch_K 18.393 63-118
HMMPanther PTHR10773 DNA-DIRECTED 2.1e-59 2-127
IPR012293 RNA polymerase subunit, RPB6/omega
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
Cellular Component GO:0030880 RNA polymerase complex    
Gene3D G3DSA:3.90.940.10 no description 9e-46 19-127
IPR020708 DNA-directed RNA polymerase, 14-18kDa subunit, conserved site
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006351 transcription, DNA-dependent    
PatternScan PS01111 RNA_POL_K_14KD NA 66-80
no_ID  
HMMPanther PTHR10773:SF8 DNA-DIRECTED 2.1e-59 2-127
Seg seg seg NA 14-51
Wolf-PSORT
Lj2g3v1549640.1	nucl 11, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1549640.1