Miyakogusa Predicted Gene

Lj2g3v1549630.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1L565_SOYBN 1211 85.6 91.6 (tr|I1L565) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G43040.1 979 70.6 84.3 | Symbols: NPG1 | tetratricopeptide repeat (TPR)-containing protein | chr2:17896049-17898524 REVERSE LENGTH=704
Medicago Medtr5g026810.1 1193 85.6 91.4 | calmodulin-binding protein | HC | chr5:11073584-11067614 | 20130731
Soybean Glyma09g34720.1 1205 84.8 90.8  
LJGI gnl|LJGI|TC79234 884 100.0 100.0 similar to UniRef100_A7P533 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1549630.1 length: 694 aa.
IPR011990 Tetratricopeptide-like helical
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.9e-30 298-350
406-685
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 21.556 548-685
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 0.0097 549-580
654-683
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 1.1 118-151
302-335
548-581
582-615
652-685
ProfileScan PS50005 TPR 8.585 302-335
548-581
582-615
652-685
no_ID  
HMMPanther PTHR23083 TETRATRICOPEPTIDE 5.1e-223 143-687
HMMPanther PTHR23083:SF163SUBFAMILY NOT 5.1e-223 143-687
HMMPfam PF13374 TPR_10 0.076 305-334
Seg seg seg NA 249-256
superfamily SSF48452 TPR-like 6e-07 534-688
408-522
306-448
14-197
Wolf-PSORT
Lj2g3v1549630.1	nucl 6, cyto 2.5, cyto_pero 2, mito 1, plas 1, vacu 1, E.R. 1, golg 1, golg_plas 1, E.R._vacu 1, E.R._plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1549630.1