Miyakogusa Predicted Gene

Lj2g3v1536330.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7KBU5_SOYBN 655 55.0 65.4 (tr|K7KBU5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G14470.1 269 34.0 51.0 | Symbols: | NB-ARC domain-containing disease resistance protein | chr3:4857940-4861104 FORWARD LENGTH=1054

Medicago Medtr3g020890.1 507 48.0 59.7 | NB-ARC domain disease resistance protein | LC | chr3:6060991-6057172 | 20130731

Soybean Glyma03g04260.1 630 51.2 63.3

LJGI gnl|LJGI|GO040264 1055 99.6 99.6 similar to UniRef100_Q2YE87 Cluster: NBS-LRR type disease resistance protein Rps1-k-2; n=1; Glycine max|Rep: NBS-LRR type disease resistance protein Rps1-k-2 - Glycine max (Soybean), partial (20%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1536330.2 length: 852 aa.

IPR000767 Disease resistance protein

method AccNumber shortName E-value location

Biological Process GO:0006952 defense response

FPrintScan PR00364 DISEASERSIST 2e-15 70-85
145-159
563-579

IPR001611 Leucine-rich repeat

Molecular Function GO:0005515 protein binding

HMMPfam PF00560 LRR_1 0.81 276-297
299-321

IPR002182 NB-ARC

Molecular Function GO:0043531 ADP binding

HMMPfam PF00931 NB-ARC 2.3e-34 52-189

IPR006553 Leucine-rich repeat, cysteine-containing subtype

HMMSmart SM00367 Leucine-rich 2.3 297-324
608-633

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.3e-24 29-188

no_ID

Gene3D G3DSA:3.40.50.300 no description 5.9e-17 49-188

Gene3D G3DSA:3.80.10.10 no description 9.1e-26 249-355
458-823

HMMPanther PTHR23155 LEUCINE-RICH 6e-69 35-559

HMMPanther PTHR23155:SF138OS03G0848700 PROTEIN 6e-69 35-559

Seg seg seg NA 90-101
596-607
624-639
759-775

superfamily SSF52058 L 6.9e-18 214-664
666-840

Wolf-PSORT

Lj2g3v1536330.2 nucl 8, cyto 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1536330.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7KBU5_SOYBN	655	55.0	65.4	(tr\|K7KBU5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G14470.1	269	34.0	51.0	\| Symbols: \| NB-ARC domain-containing disease resistance protein \| chr3:4857940-4861104 FORWARD LENGTH=1054
Medicago	Medtr3g020890.1	507	48.0	59.7	\| NB-ARC domain disease resistance protein \| LC \| chr3:6060991-6057172 \| 20130731
Soybean	Glyma03g04260.1	630	51.2	63.3
LJGI	gnl\|LJGI\|GO040264	1055	99.6	99.6	similar to UniRef100_Q2YE87 Cluster: NBS-LRR type disease resistance protein Rps1-k-2; n=1; Glycine max\|Rep: NBS-LRR type disease resistance protein Rps1-k-2 - Glycine max (Soybean), partial (20%)

IPR000767	Disease resistance protein
Lj2g3v1536330.2				length: 852 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006952	defense response
FPrintScan	PR00364	DISEASERSIST	2e-15	70-85 145-159 563-579
IPR001611	Leucine-rich repeat
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00560	LRR_1	0.81	276-297 299-321
IPR002182	NB-ARC
Molecular Function	GO:0043531	ADP binding
HMMPfam	PF00931	NB-ARC	2.3e-34	52-189
IPR006553	Leucine-rich repeat, cysteine-containing subtype
HMMSmart	SM00367	Leucine-rich	2.3	297-324 608-633
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.3e-24	29-188
no_ID
Gene3D	G3DSA:3.40.50.300	no description	5.9e-17	49-188
Gene3D	G3DSA:3.80.10.10	no description	9.1e-26	249-355 458-823
HMMPanther	PTHR23155	LEUCINE-RICH	6e-69	35-559
HMMPanther	PTHR23155:SF138OS03G0848700	PROTEIN	6e-69	35-559
Seg	seg	seg	NA	90-101 596-607 624-639 759-775
superfamily	SSF52058	L	6.9e-18	214-664 666-840