Miyakogusa Predicted Gene

Lj2g3v1536140.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1J4L9_SOYBN 855 78.4 84.0 (tr|I1J4L9) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT1G31970.1 699 76.9 85.2 | Symbols: STRS1 | DEA(D/H)-box RNA helicase family protein | chr1:11479921-11482707 FORWARD LENGTH=537
Medicago Medtr5g027840.1 800 74.9 82.3 | DEAD-box ATP-dependent RNA helicase | HC | chr5:11616617-11610718 | 20130731
Soybean Glyma01g01390.1 855 78.4 84.0  
LJGI gnl|LJGI|TC64040 1233 100.0 100.0 similar to UniRef100_A7QQZ1 Cluster: Chromosome undetermined scaffold_146, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_146, whole genome shotgun sequence - Vitis vinifera (Grape), partial (40%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1536140.1 length: 536 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 269-277
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.2e-26 384-460
HMMSmart SM00490 helicase 7.1e-33 379-460
ProfileScan PS51194 HELICASE_CTER 22.166 336-499
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.9e-45 140-307
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 7.3e-63 134-340
ProfileScan PS51192 HELICASE_ATP_BIND_1 29.755 146-323
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 9.346 117-143
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.4e-71 189-483
no_ID  
Coil coil coiled-coil NA 50-86
Gene3D G3DSA:3.40.50.300 no description 2e-50 111-339
340-496
HMMPanther PTHR24031 FAMILY 2.1e-217 20-536
HMMPanther PTHR24031:SF1 SUBFAMILY 2.1e-217 20-536
Seg seg seg NA 28-37
60-79
106-115
Wolf-PSORT
Lj2g3v1536140.1	cyto 6, nucl 4, chlo 3, cyto_E.R. 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1536140.1