Miyakogusa Predicted Gene

Lj2g3v1496130.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KDN8_MEDTR 728 66.3 75.0 (tr|G7KDN8) E3 ubiquitin-protein ligase RNF14 OS=Medicago truncatula GN=MTR_5g029700 PE=4 SV=1
TAIR_pep AT1G32340.1 553 49.4 66.0 | Symbols: NHL8 | NDR1/HIN1-like 8 | chr1:11663462-11666037 REVERSE LENGTH=688
Medicago Medtr5g029700.1 728 66.3 75.0 | NDR1/HIN1-like protein | HC | chr5:12495540-12488193 | 20130731
Soybean Glyma09g33900.1 455 62.9 76.0  
LJGI gnl|LJGI|DC598671 632 91.1 91.1 weakly similar to UniRef100_A7PC55 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1496130.1 length: 528 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 1.5 265-309
477-506
ProfileScan PS50089 ZF_RING_2 9.494 265-309
IPR002867 Zinc finger, C6HC-type
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF01485 IBR 4.4e-08 334-391
HMMSmart SM00647 In 2.4e-10 333-391
IPR006575 RWD domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF05773 RWD 1.4e-22 70-204
HMMSmart SM00591 no description 1.8e-24 75-210
ProfileScan PS50908 RWD 16.342 75-210
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 5.2e-06 350-365
IPR016135 Ubiquitin-conjugating enzyme/RWD-like
Gene3D G3DSA:3.10.110.10 no description 8.9e-20 64-203
superfamily SSF54495 UBC-like 6.7e-21 59-204
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 282-291
no_ID  
HMMPanther PTHR11685 ARIADNE 3.2e-160 53-513
HMMPanther PTHR11685:SF61 SUBFAMILY 3.2e-160 53-513
Seg seg seg NA 70-81
superfamily SSF57850 RING/U-box 8.6e-10 258-357
333-401
457-528
Wolf-PSORT
Lj2g3v1496130.1	nucl 8, cyto 4, cysk_nucl 4, nucl_plas 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1496130.1