Miyakogusa Predicted Gene
- Lj2g3v1485060.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TKM1_SOYBN |
391 |
89.5 |
96.7 |
(tr|C6TKM1) Uncharacterized protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G17790.1 |
359 |
81.4 |
92.9 |
| Symbols: | SNARE associated Golgi protein family | chr4:9891425-9892675 FORWARD LENGTH=264 |
| Medicago |
Medtr5g029890.1 |
379 |
86.7 |
93.8 |
| SNARE associated family protein | HC | chr5:12568208-12571694 | 20130731 |
| Soybean |
Glyma09g33850.1 |
391 |
89.5 |
96.7 |
|
| LJGI |
gnl|LJGI|TC72162 |
1255 |
100.0 |
100.0 |
similar to UniRef100_A7PC67 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (83%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1485060.1 |
length: 210 aa. |
| IPR015414 |
SNARE associated Golgi protein |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF09335 |
SNARE_assoc |
1.7e-17 |
52-171 |
| no_ID |
|
| HMMPanther |
PTHR12677 |
UNCHARACTERIZED |
2.8e-66 |
8-209 |
- Wolf-PSORT
Lj2g3v1485060.1 cyto 6, E.R. 4, nucl 1, plas 1, pero 1, cysk 1, cysk_nucl 1, nucl_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1485060.1 |
|