Miyakogusa Predicted Gene

Lj2g3v1451700.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7K1E2_SOYBN 555 73.9 77.9 (tr|K7K1E2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT5G65450.1 304 48.8 58.8 | Symbols: UBP17 | ubiquitin-specific protease 17 | chr5:26157863-26161096 FORWARD LENGTH=731

Medicago Medtr5g032380.1 528 72.4 76.5 | ubiquitin carboxy-terminal hydrolase | HC | chr5:13903707-13894717 | 20130731

Soybean Glyma02g04640.1 573 53.5 57.7

LJGI gnl|LJGI|BP042181 509 100.0 100.0 similar to UniRef100_A7R0I9 Cluster: Chromosome undetermined scaffold_310, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_310, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1451700.1 length: 601 aa.

IPR001394 Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2

method AccNumber shortName E-value location

Molecular Function GO:0004221 ubiquitin thiolesterase activity

Biological Process GO:0006511 ubiquitin-dependent protein catabolic process

HMMPfam PF00443 UCH 5e-22 258-432

ProfileScan PS50235 UCH_2_3 19.621 1-436

no_ID

Gene3D G3DSA:2.20.210.10 no description 4.6e-09 268-340

HMMPanther PTHR24006 FAMILY 8e-92 235-499

HMMPanther PTHR24006:SF85 SUBFAMILY 8e-92 235-499

Seg seg seg NA 79-89
167-181
479-491
519-538
567-580
591-601

superfamily SSF54001 Cysteine 3.2e-52 221-468

Wolf-PSORT

Lj2g3v1451700.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1451700.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7K1E2_SOYBN	555	73.9	77.9	(tr\|K7K1E2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT5G65450.1	304	48.8	58.8	\| Symbols: UBP17 \| ubiquitin-specific protease 17 \| chr5:26157863-26161096 FORWARD LENGTH=731
Medicago	Medtr5g032380.1	528	72.4	76.5	\| ubiquitin carboxy-terminal hydrolase \| HC \| chr5:13903707-13894717 \| 20130731
Soybean	Glyma02g04640.1	573	53.5	57.7
LJGI	gnl\|LJGI\|BP042181	509	100.0	100.0	similar to UniRef100_A7R0I9 Cluster: Chromosome undetermined scaffold_310, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome undetermined scaffold_310, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)

IPR001394	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2
Lj2g3v1451700.1				length: 601 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0004221	ubiquitin thiolesterase activity
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process
HMMPfam	PF00443	UCH	5e-22	258-432
ProfileScan	PS50235	UCH_2_3	19.621	1-436
no_ID
Gene3D	G3DSA:2.20.210.10	no description	4.6e-09	268-340
HMMPanther	PTHR24006	FAMILY	8e-92	235-499
HMMPanther	PTHR24006:SF85	SUBFAMILY	8e-92	235-499
Seg	seg	seg	NA	79-89 167-181 479-491 519-538 567-580 591-601
superfamily	SSF54001	Cysteine	3.2e-52	221-468