Miyakogusa Predicted Gene
- Lj2g3v1414960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SBY2_LOTJA |
147 |
100.0 |
100.0 |
(tr|I3SBY2) Uncharacterized protein OS=Lotus japonicus PE=3 SV=1 |
| TAIR_pep |
AT1G61700.1 |
135 |
87.3 |
97.2 |
| Symbols: | RNA polymerases N / 8 kDa subunit | chr1:22787105-22788112 FORWARD LENGTH=71 |
| Medicago |
Medtr5g034050.1 |
134 |
85.9 |
94.4 |
| DNA-directed RNA polymerase II 8.2 kDa protein | HC | chr5:14717086-14713333 | 20130731 |
| Soybean |
Glyma02g04080.1 |
142 |
97.2 |
97.2 |
|
| LJGI |
gnl|LJGI|TC68363 |
434 |
100.0 |
100.0 |
homologue to UniRef100_Q39290 Cluster: DNA-directed RNA polymerases I, II, and III subunit RPABC5; n=1; Brassica napus|Rep: DNA-directed RNA polymerases I, II, and III subunit RPABC5 - Brassica napus (Rape), complete |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1414960.1 |
length: 71 aa. |
| IPR000268 |
DNA-directed RNA polymerase, subunit N/Rpb10 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| BlastProDom |
PD006539 |
Q6BHF3_DEBHA_Q6BHF3; |
4e-16 |
9-63 |
| HAMAP |
MF_00250 |
RNApol_arch_N |
19.407 |
1-63 |
| HMMPIR |
PIRSF005653 |
DNA-directed |
8.9e-40 |
1-68 |
| HMMPfam |
PF01194 |
RNA_pol_N |
6.3e-31 |
1-60 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
3.7e-40 |
1-68 |
| IPR020789 |
RNA polymerases, subunit N, zinc binding site |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| PatternScan |
PS01112 |
RNA_POL_N_8KD |
NA |
2-11 |
| IPR023580 |
RNA polymerase subunit RPB10 |
| superfamily |
SSF46924 |
RNA |
1.6e-28 |
1-64 |
| no_ID |
|
| HMMPanther |
PTHR23413 |
60S |
2.5e-44 |
1-71 |
- Wolf-PSORT
Lj2g3v1414960.1 nucl 8, mito 2, cyto 1, plas 1, extr 1, golg 1, chlo_mito 1, cyto_mito 1, golg_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1414960.1 |
|