Miyakogusa Predicted Gene
- Lj2g3v1349420.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6ZS34_SOYBN |
358 |
68.6 |
84.3 |
(tr|C6ZS34) TIR-NBS-LRR type disease resistance protein OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT5G41550.1 |
146 |
37.4 |
56.1 |
| Symbols: | Disease resistance protein (TIR-NBS-LRR class) family | chr5:16617232-16620785 REVERSE LENGTH=1085 |
| Medicago |
Medtr5g037630.1 |
340 |
70.9 |
82.9 |
| disease resistance protein (TIR-NBS-LRR class) | LC | chr5:16466497-16463962 | 20130731 |
| Soybean |
Glyma02g02780.1 |
358 |
68.6 |
84.3 |
|
| LJGI |
gnl|LJGI|TC62295 |
1552 |
100.0 |
100.0 |
weakly similar to UniRef100_A2Q1X9 Cluster: TIR; n=1; Medicago truncatula|Rep: TIR - Medicago truncatula (Barrel medic), partial (12%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1349420.2 |
length: 259 aa. |
| IPR000157 |
Toll/interleukin-1 receptor homology (TIR) domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| HMMPfam |
PF01582 |
TIR |
8.1e-35 |
22-152 |
| HMMSmart |
SM00255 |
Toll |
4.5e-42 |
19-158 |
| ProfileScan |
PS50104 |
TIR |
27.165 |
18-158 |
| superfamily |
SSF52200 |
Toll/Interleukin |
7.3e-42 |
8-161 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.10140 |
no description |
5.9e-21 |
18-152 |
| HMMPanther |
PTHR11017 |
LEUCINE-RICH |
3.9e-62 |
9-184 |
| HMMPanther |
PTHR11017:SF130DISEASE |
RESISTANCE |
3.9e-62 |
9-184 |
| Seg |
seg |
seg |
NA |
4-15 |
- Wolf-PSORT
Lj2g3v1349420.2 mito 6.5, chlo_mito 5.5, chlo 3.5, nucl 2.5, cyto_nucl 2.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1349420.2 |
|