Miyakogusa Predicted Gene
- Lj2g3v1339000.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7K1Q6_SOYBN |
242 |
66.1 |
76.5 |
(tr|K7K1Q6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G02710.1 |
183 |
57.7 |
69.2 |
| Symbols: PLP, PLPB | PAS/LOV protein B | chr2:758812-760608 REVERSE LENGTH=399 |
| Medicago |
Medtr5g038420.4 |
219 |
63.2 |
73.7 |
| TWIN LOV protein | HC | chr5:16854490-16848506 | 20130731 |
| Soybean |
Glyma01g04920.1 |
242 |
66.1 |
76.5 |
|
| LJGI |
gnl|LJGI|TC57783 |
1120 |
100.0 |
100.0 |
weakly similar to UniRef100_A7Q2R5 Cluster: Chromosome chr1 scaffold_46, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_46, whole genome shotgun sequence - Vitis vinifera (Grape), partial (30%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1339000.1 |
length: 208 aa. |
| IPR000014 |
PAS domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004871 |
signal transducer activity |
|
|
| Biological Process |
GO:0007165 |
signal transduction |
|
|
| HMMTigr |
TIGR00229 |
sensory_box: |
6.7e-07 |
49-134 |
| ProfileScan |
PS50112 |
PAS |
8.848 |
21-70 |
| superfamily |
SSF55785 |
PYP-like |
9.8e-17 |
32-137 |
| IPR001610 |
PAC motif |
| HMMSmart |
SM00086 |
Motif |
0.00084 |
99-142 |
| no_ID |
|
| Gene3D |
G3DSA:3.30.450.20 |
no description |
1.1e-20 |
36-136 |
| HMMPanther |
PTHR23244 |
KELCH |
1.9e-38 |
39-138 |
| HMMPanther |
PTHR23244:SF1 |
TWIN |
1.9e-38 |
39-138 |
| HMMPfam |
PF13426 |
PAS_9 |
3.8e-18 |
36-136 |
| Seg |
seg |
seg |
NA |
149-154 |
- Wolf-PSORT
Lj2g3v1339000.1 chlo 4, nucl 2, cyto 2, plas 2, vacu 2, cyto_nucl 2, chlo_mito 2, nucl_plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1339000.1 |
|