Miyakogusa Predicted Gene

Lj2g3v1316330.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SIZ2_LOTJA 396 95.0 95.0 (tr|I3SIZ2) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT1G69780.1 248 64.9 72.0 | Symbols: ATHB13 | Homeobox-leucine zipper protein family | chr1:26259166-26260465 FORWARD LENGTH=294
Medicago Medtr5g039000.1 346 83.7 89.1 | homeobox leucine zipper ATHB-like protein | HC | chr5:17182895-17180360 | 20130731
Soybean Glyma18g15970.1 348 84.6 88.6  
LJGI gnl|LJGI|TC74784 1207 100.0 100.0 homologue to UniRef100_A7QEH5 Cluster: Chromosome chr1 scaffold_84, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_84, whole genome shotgun sequence - Vitis vinifera (Grape), partial (75%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1316330.1 length: 201 aa.
IPR000047 Helix-turn-helix motif
method AccNumber shortName E-value location
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding    
FPrintScan PR00031 HTHREPRESSR 6.5e-06 21-30
30-46
IPR001356 Homeodomain
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00046 Homeobox 2.3e-15 2-48
HMMSmart SM00389 Homeodomain 8.7e-11 1-54
ProfileScan PS50071 HOMEOBOX_2 16.714 1-50
IPR003106 Leucine zipper, homeobox-associated
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02183 HALZ 9.2e-19 50-93
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 2e-18 2-57
superfamily SSF46689 Homeodomain-like 2.8e-16 2-65
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 25-48
no_ID  
Coil coil coiled-coil NA 42-91
HMMPanther PTHR24326 FAMILY 1.6e-79 1-127
HMMPanther PTHR24326:SF74 SUBFAMILY 1.6e-79 1-127
Seg seg seg NA 105-114
Wolf-PSORT
Lj2g3v1316330.1	nucl 12, chlo 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1316330.1