Miyakogusa Predicted Gene
- Lj2g3v1294210.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SHV4_LOTJA |
241 |
87.9 |
87.9 |
(tr|I3SHV4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G69700.1 |
143 |
53.2 |
64.7 |
| Symbols: ATHVA22C, HVA22C | HVA22 homologue C | chr1:26220337-26221663 FORWARD LENGTH=184 |
| Medicago |
Medtr5g039530.1 |
208 |
75.0 |
83.3 |
| TB2/DP1, HVA22 family protein | HC | chr5:17407066-17403365 | 20130731 |
| Soybean |
Glyma02g11770.1 |
207 |
77.7 |
83.8 |
|
| LJGI |
gnl|LJGI|TC72459 |
797 |
100.0 |
100.0 |
similar to UniRef100_A7QEG0 Cluster: Chromosome chr1 scaffold_84, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_84, whole genome shotgun sequence - Vitis vinifera (Grape), partial (85%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1294210.1 |
length: 132 aa. |
| IPR004345 |
TB2/DP1/HVA22-related protein |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR12300 |
HVA22-LIKE |
9.8e-23 |
1-120 |
| HMMPfam |
PF03134 |
TB2_DP1_HVA22 |
7.7e-10 |
1-50 |
| no_ID |
|
| HMMPanther |
PTHR12300:SF11 |
HVA22-LIKE |
9.8e-23 |
1-120 |
| Seg |
seg |
seg |
NA |
53-68 |
- Wolf-PSORT
Lj2g3v1294210.1 cyto 6.5, cyto_E.R. 4, nucl 3, chlo 1, mito 1, extr 1, cysk 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1294210.1 |
|