Miyakogusa Predicted Gene

Lj2g3v1267220.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K204_SOYBN 1324 78.4 86.4 (tr|K7K204) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G69350.1 857 53.9 72.3 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:26069882-26072245 FORWARD LENGTH=787
Medicago Medtr5g043450.1 1303 76.6 86.0 | PPR containing plant-like protein | HC | chr5:19108134-19105482 | 20130731
Soybean Glyma01g06690.1 1182 79.2 87.0  
LJGI gnl|LJGI|TC80194 617 100.0 100.0 weakly similar to UniRef100_A7P2J6 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1267220.1 length: 819 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 8.6e-06 444-469
472-497
HMMPfam PF13041 PPR_2 3.2e-12 167-214
267-312
370-415
570-618
HMMTigr TIGR00756 PPR: 2.4e-05 169-203
271-304
372-405
472-505
573-607
608-642
ProfileScan PS51375 PPR 6.226 63-97
101-135
167-201
136-166
202-236
268-302
237-267
303-337
370-404
470-504
439-469
505-539
571-605
540-570
606-640
641-671
707-741
673-703
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00054 264-298
533-630
no_ID  
HMMPanther PTHR24015 FAMILY 5.7e-237 3-785
HMMPanther PTHR24015:SF166SUBFAMILY NOT 5.7e-237 3-785
Seg seg seg NA 406-421
Wolf-PSORT
Lj2g3v1267220.1	chlo 4, nucl 4, cyto 3, mito 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1267220.1