Miyakogusa Predicted Gene

Lj2g3v1252630.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LPX7_SOYBN 983 70.9 78.3 (tr|I1LPX7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G50280.1 784 61.1 75.0 | Symbols: EMB1006 | Pentatricopeptide repeat (PPR) superfamily protein | chr5:20459238-20461504 FORWARD LENGTH=723
Medicago Medtr5g045490.1 941 65.3 73.3 | PPR containing plant-like protein | HC | chr5:19957328-19961582 | 20130731
Soybean Glyma12g04160.1 983 70.9 78.3  
LJGI gnl|LJGI|AV767789 741 98.2 98.2 similar to UniRef100_Q89S39 Cluster: Bll2566 protein; n=1; Bradyrhizobium japonicum|Rep: Bll2566 protein - Bradyrhizobium japonicum, partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1252630.1 length: 733 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00055 379-405
586-615
HMMPfam PF13041 PPR_2 9.9e-12 302-346
408-455
517-561
618-666
HMMPfam PF13812 PPR_3 0.097 481-513
HMMTigr TIGR00756 PPR: 1.4e-05 305-337
410-443
481-514
516-549
552-582
586-610
622-654
656-689
ProfileScan PS51375 PPR 10.019 302-336
267-297
337-372
408-442
373-407
443-477
478-513
514-548
549-583
584-618
619-653
654-688
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5.4e-06 516-683
no_ID  
Coil coil coiled-coil NA 86-120
HMMPanther PTHR24015 FAMILY 3.9e-115 206-693
Seg seg seg NA 14-27
88-118
172-187
664-676
703-714
Wolf-PSORT
Lj2g3v1252630.1	chlo 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1252630.1