Miyakogusa Predicted Gene

Lj2g3v1252590.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7JY14_MEDTR 933 72.7 80.3 (tr|G7JY14) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_5g044930 PE=4 SV=1
TAIR_pep AT1G69290.1 786 60.5 74.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:26047372-26049348 REVERSE LENGTH=658
Medicago Medtr5g044930.1 933 72.7 80.3 | PPR containing plant-like protein | HC | chr5:19700063-19702654 | 20130731
Soybean Glyma02g13020.1 898 73.9 83.1  
LJGI gnl|LJGI|FS349031 1166 100.0 100.0 similar to UniRef100_A7P2F5 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1252590.2 length: 624 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.11 254-273
336-360
HMMPfam PF13041 PPR_2 4.6e-11 474-517
HMMPfam PF13812 PPR_3 0.00024 400-431
HMMTigr TIGR00756 PPR: 4.5e-07 474-505
ProfileScan PS51375 PPR 5.722 181-216
252-287
329-363
399-433
364-398
470-504
505-535
547-581
no_ID  
HMMPanther PTHR24015 FAMILY 4e-70 17-586
HMMPanther PTHR24015:SF0 SUBFAMILY 4e-70 17-586
Seg seg seg NA 48-61
Wolf-PSORT
Lj2g3v1252590.2	chlo 7, mito 5, nucl 1, cyto 1, cyto_nucl 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1252590.2