Miyakogusa Predicted Gene

Lj2g3v1240070.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7JEN3_MEDTR 801 88.4 91.8 (tr|G7JEN3) UDP-glucuronate 4-epimerase OS=Medicago truncatula GN=MTR_4g024600 PE=4 SV=1

TAIR_pep AT4G00110.1 726 81.1 86.6 | Symbols: GAE3 | UDP-D-glucuronate 4-epimerase 3 | chr4:38702-39994 REVERSE LENGTH=430

Medicago Medtr4g024600.1 801 88.4 91.8 | UDP-D-glucuronate 4-epimerase | HC | chr4:8316954-8314842 | 20130731

Soybean Glyma01g33650.1 776 86.1 90.5

LJGI gnl|LJGI|TC58078 1082 100.0 100.0 similar to UniRef100_A7PYE7 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1240070.1 length: 438 aa.

IPR001509 NAD-dependent epimerase/dehydratase

method AccNumber shortName E-value location

Molecular Function GO:0003824 catalytic activity

Biological Process GO:0044237 cellular metabolic process

Molecular Function GO:0050662 coenzyme binding

HMMPfam PF01370 Epimerase 6e-47 101-337

IPR008089 Nucleotide sugar epimerase

Biological Process GO:0005975 carbohydrate metabolic process

Molecular Function GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives

FPrintScan PR01713 NUCEPIMERASE 2.4e-26 127-143
317-332
352-367
392-409

IPR016040 NAD(P)-binding domain

Gene3D G3DSA:3.40.50.720 no description 4.5e-47 98-281

no_ID

Gene3D G3DSA:3.90.25.10 no description 4.3e-25 282-434

HMMPanther PTHR10366 NAD 1.7e-217 94-436

HMMPanther PTHR10366:SF42 UDP-GLUCURONATE 1.7e-217 94-436

Seg seg seg NA 87-96
338-348

superfamily SSF51735 NAD(P)-binding 1.5e-73 99-434

Wolf-PSORT

Lj2g3v1240070.1 E.R. 5, nucl 3, cyto 2, vacu 2, chlo 1, mito 1, chlo_mito 1, cyto_pero 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1240070.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7JEN3_MEDTR	801	88.4	91.8	(tr\|G7JEN3) UDP-glucuronate 4-epimerase OS=Medicago truncatula GN=MTR_4g024600 PE=4 SV=1
TAIR_pep	AT4G00110.1	726	81.1	86.6	\| Symbols: GAE3 \| UDP-D-glucuronate 4-epimerase 3 \| chr4:38702-39994 REVERSE LENGTH=430
Medicago	Medtr4g024600.1	801	88.4	91.8	\| UDP-D-glucuronate 4-epimerase \| HC \| chr4:8316954-8314842 \| 20130731
Soybean	Glyma01g33650.1	776	86.1	90.5
LJGI	gnl\|LJGI\|TC58078	1082	100.0	100.0	similar to UniRef100_A7PYE7 Cluster: Chromosome chr15 scaffold_37, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr15 scaffold_37, whole genome shotgun sequence - Vitis vinifera (Grape), partial (41%)

IPR001509	NAD-dependent epimerase/dehydratase
Lj2g3v1240070.1				length: 438 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003824	catalytic activity
Biological Process	GO:0044237	cellular metabolic process
Molecular Function	GO:0050662	coenzyme binding
HMMPfam	PF01370	Epimerase	6e-47	101-337
IPR008089	Nucleotide sugar epimerase
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives
FPrintScan	PR01713	NUCEPIMERASE	2.4e-26	127-143 317-332 352-367 392-409
IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	no description	4.5e-47	98-281
no_ID
Gene3D	G3DSA:3.90.25.10	no description	4.3e-25	282-434
HMMPanther	PTHR10366	NAD	1.7e-217	94-436
HMMPanther	PTHR10366:SF42	UDP-GLUCURONATE	1.7e-217	94-436
Seg	seg	seg	NA	87-96 338-348
superfamily	SSF51735	NAD(P)-binding	1.5e-73	99-434