Miyakogusa Predicted Gene
- Lj2g3v1226760.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q533S7_LOTJA |
253 |
84.2 |
84.2 |
(tr|Q533S7) MADS box protein AP1b OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G69120.1 |
133 |
70.5 |
85.3 |
| Symbols: AP1, AGL7 | K-box region and MADS-box transcription factor family protein | chr1:25982576-25986102 REVERSE LENGTH=256 |
| Medicago |
Medtr5g046790.1 |
185 |
63.6 |
72.8 |
| MADS-box transcription factor | HC | chr5:20514975-20509786 | 20130731 |
| Soybean |
Glyma01g08150.1 |
173 |
62.3 |
71.5 |
|
| LJGI |
gnl|LJGI|NP7225997 |
577 |
100.0 |
100.0 |
GB|AY770396.1|AAX13297.1 MADS box protein AP1b;LjAP1b; A function protein; includes MADS, I, K, and C domains; AP1/SQUA-like |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1226760.1 |
length: 138 aa. |
| IPR002487 |
Transcription factor, K-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003700 |
sequence-specific DNA binding transcription factor activity |
|
|
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF01486 |
K-box |
1.8e-27 |
20-106 |
| ProfileScan |
PS51297 |
K_BOX |
14.679 |
28-120 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
62-112 |
| HMMPanther |
PTHR11945 |
MADS |
5.5e-24 |
1-100 |
| HMMPanther |
PTHR11945:SF19 |
MADS |
5.5e-24 |
1-100 |
| Seg |
seg |
seg |
NA |
96-105 |
- Wolf-PSORT
Lj2g3v1226760.1 cyto_nucl 6.66667, nucl 5, cyto 5, nucl_plas 4, cyto_E.R. 3.5, plas 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1226760.1 |
|