Miyakogusa Predicted Gene

Lj2g3v1172580.3

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7K7H1_SOYBN 365 80.0 84.7 (tr|K7K7H1) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G25680.1 246 52.1 72.3 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). | chr3:9349693-9352258 FORWARD LENGTH=558

Medicago Medtr5g053260.1 360 77.4 86.0 | hypothetical protein | HC | chr5:21950015-21957569 | 20130731

Soybean Glyma01g22630.2 359 79.6 84.3

LJGI gnl|LJGI|TC68332 394 100.0 100.0 similar to UniRef100_A7P319 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1172580.3 length: 235 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 138-159
177-205

Seg seg seg NA 217-228

Wolf-PSORT

Lj2g3v1172580.3 cyto 3.5, chlo 3, nucl 3, cyto_E.R. 2.5, plas 2, chlo_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1172580.3

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7K7H1_SOYBN	365	80.0	84.7	(tr\|K7K7H1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G25680.1	246	52.1	72.3	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: S-layer homology domain (InterPro:IPR001119); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23890.1); Has 2454 Blast hits to 2065 proteins in 355 species: Archae - 39; Bacteria - 284; Metazoa - 1081; Fungi - 166; Plants - 264; Viruses - 45; Other Eukaryotes - 575 (source: NCBI BLink). \| chr3:9349693-9352258 FORWARD LENGTH=558
Medicago	Medtr5g053260.1	360	77.4	86.0	\| hypothetical protein \| HC \| chr5:21950015-21957569 \| 20130731
Soybean	Glyma01g22630.2	359	79.6	84.3
LJGI	gnl\|LJGI\|TC68332	394	100.0	100.0	similar to UniRef100_A7P319 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)

no_ID
Lj2g3v1172580.3				length: 235 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	138-159 177-205
Seg	seg	seg	NA	217-228