Miyakogusa Predicted Gene

Lj2g3v1079640.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1LWS1_SOYBN 783 85.5 92.6 (tr|I1LWS1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G15550.1 639 70.2 85.0 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:5059051-5062003 REVERSE LENGTH=433
Medicago Medtr7g099170.1 751 82.6 90.7 | transducin/WD40 repeat protein | HC | chr7:39743232-39749057 | 20130731
Soybean Glyma13g06140.1 783 85.5 92.6  
LJGI gnl|LJGI|TC71846 1372 98.8 98.8 similar to UniRef100_A7PA93 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1079640.1 length: 433 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 6.2e-07 110-138
142-183
200-234
263-299
351-387
HMMSmart SM00320 WD40 0.97 100-138
140-183
195-234
261-299
302-341
347-387
390-428
ProfileScan PS50082 WD_REPEATS_2 11.277 147-192
202-234
268-308
354-396
IPR012972 NLE
HMMPfam PF08154 NLE 1.1e-21 12-80
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.2e-55 109-426
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 29.425 147-433
superfamily SSF50978 WD40 9.5e-49 101-426
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 374-388
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 2.2e-06 170-184
286-300
374-388
no_ID  
HMMPanther PTHR19855 WD40 3.3e-151 11-426
HMMPanther PTHR19855:SF11 WD40 3.3e-151 11-426
Wolf-PSORT
Lj2g3v1079640.1	cyto 9, chlo 1, mito 1, plas 1, extr 1, cysk 1, chlo_mito 1, cysk_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1079640.1