Miyakogusa Predicted Gene
- Lj2g3v1079520.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MI15_SOYBN |
276 |
57.8 |
71.7 |
(tr|I1MI15) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G25180.1 |
249 |
53.6 |
69.9 |
| Symbols: ARR12, RR12 | response regulator 12 | chr2:10724490-10726961 REVERSE LENGTH=596 |
| Medicago |
Medtr4g131580.1 |
253 |
52.2 |
66.4 |
| two-component response regulator ARR12-like protein | HC | chr4:54896152-54892823 | 20130731 |
| Soybean |
Glyma15g24770.1 |
276 |
57.8 |
71.7 |
|
| LJGI |
gnl|LJGI|TC80401 |
58.0 |
77.4 |
77.4 |
similar to UniRef100_A7R0P8 Cluster: Chromosome undetermined scaffold_314, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_314, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1079520.1 |
length: 255 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
2.8e-11 |
203-251 |
| IPR001789 |
Signal transduction response regulator, receiver domain |
| Molecular Function |
GO:0000156 |
phosphorelay response regulator activity |
|
|
| Biological Process |
GO:0000160 |
phosphorelay signal transduction system |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF00072 |
Response_reg |
1.2e-19 |
25-134 |
| HMMSmart |
SM00448 |
cheY-homologous |
1.3e-23 |
23-136 |
| ProfileScan |
PS50110 |
RESPONSE_REGULATORY |
28.608 |
24-140 |
| IPR006447 |
Myb domain, plants |
| HMMTigr |
TIGR01557 |
myb_SHAQKYF: |
2.4e-21 |
201-251 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
3.5e-23 |
199-250 |
| superfamily |
SSF46689 |
Homeodomain-like |
2.1e-14 |
197-250 |
| IPR011006 |
CheY-like superfamily |
| superfamily |
SSF52172 |
CheY-like |
2.5e-30 |
20-141 |
| IPR017930 |
Myb domain |
| ProfileScan |
PS51294 |
HTH_MYB |
11.760 |
198-255 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2300 |
no description |
1e-34 |
22-156 |
| HMMPanther |
PTHR26402 |
RESPONSE |
3.2e-50 |
23-227 |
| HMMPanther |
PTHR26402:SF256TWO-COMPONENT |
RESPONSE |
3.2e-50 |
23-227 |
| Seg |
seg |
seg |
NA |
182-198 |
- Wolf-PSORT
Lj2g3v1079520.1 cyto 8, nucl 2, chlo 1, extr 1, cysk 1, golg 1, nucl_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1079520.1 |
|