Miyakogusa Predicted Gene

Lj2g3v1079510.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LWR4_SOYBN 1667 84.4 89.3 (tr|I1LWR4) Phosphorylase OS=Glycine max PE=3 SV=1

TAIR_pep AT3G29320.1 1464 72.8 82.0 | Symbols: | Glycosyl transferase, family 35 | chr3:11252871-11257587 FORWARD LENGTH=962

Medicago Medtr0288s0040.1 1481 82.9 88.8 | glycogen/starch/alpha-glucan phosphorylase family protein | HC | scaffold0288:14536-7132 | 20130731

Soybean Glyma13g06040.1 1667 84.4 89.3

LJGI gnl|LJGI|TC72594 1905 100.0 100.0 homologue to UniRef100_P53536 Cluster: Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor; n=1; Vicia faba|Rep: Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor - Vicia faba (Broad bean), partial (32%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1079510.1 length: 973 aa.

IPR000811 Glycosyl transferase, family 35

method AccNumber shortName E-value location

Biological Process GO:0005975 carbohydrate metabolic process

Molecular Function GO:0008184 glycogen phosphorylase activity

HMMPIR PIRSF000460 Glucan 8.7e-218 67-971

HMMPanther PTHR11468 GLYCOGEN 0 89-973

HMMPfam PF00343 Phosphorylase 2.2e-174 177-500
570-969

PatternScan PS00102 PHOSPHORYLASE NA 811-823

IPR011833 Glycogen/starch/alpha-glucan phosphorylase

Molecular Function GO:0004645 phosphorylase activity

Biological Process GO:0005975 carbohydrate metabolic process

Molecular Function GO:0030170 pyridoxal phosphate binding

HMMTigr TIGR02093 P_ylase: 8e-169 564-967

no_ID

Coil coil coiled-coil NA 521-542

Gene3D G3DSA:3.40.50.2000 no description 1.8e-121 567-631
632-952

HMMPanther PTHR11468:SF0 SUBFAMILY 0 89-973

Seg seg seg NA 195-206
528-542
550-573

superfamily SSF53756 UDP-Glycosyltransferase/glycogen 5e-285 78-973

Wolf-PSORT

Lj2g3v1079510.1 chlo 11, mito 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1079510.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LWR4_SOYBN	1667	84.4	89.3	(tr\|I1LWR4) Phosphorylase OS=Glycine max PE=3 SV=1
TAIR_pep	AT3G29320.1	1464	72.8	82.0	\| Symbols: \| Glycosyl transferase, family 35 \| chr3:11252871-11257587 FORWARD LENGTH=962
Medicago	Medtr0288s0040.1	1481	82.9	88.8	\| glycogen/starch/alpha-glucan phosphorylase family protein \| HC \| scaffold0288:14536-7132 \| 20130731
Soybean	Glyma13g06040.1	1667	84.4	89.3
LJGI	gnl\|LJGI\|TC72594	1905	100.0	100.0	homologue to UniRef100_P53536 Cluster: Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor; n=1; Vicia faba\|Rep: Alpha-1,4 glucan phosphorylase L isozyme, chloroplast precursor - Vicia faba (Broad bean), partial (32%)

IPR000811	Glycosyl transferase, family 35
Lj2g3v1079510.1				length: 973 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0008184	glycogen phosphorylase activity
HMMPIR	PIRSF000460	Glucan	8.7e-218	67-971
HMMPanther	PTHR11468	GLYCOGEN	0	89-973
HMMPfam	PF00343	Phosphorylase	2.2e-174	177-500 570-969
PatternScan	PS00102	PHOSPHORYLASE	NA	811-823
IPR011833	Glycogen/starch/alpha-glucan phosphorylase
Molecular Function	GO:0004645	phosphorylase activity
Biological Process	GO:0005975	carbohydrate metabolic process
Molecular Function	GO:0030170	pyridoxal phosphate binding
HMMTigr	TIGR02093	P_ylase:	8e-169	564-967
no_ID
Coil	coil	coiled-coil	NA	521-542
Gene3D	G3DSA:3.40.50.2000	no description	1.8e-121	567-631 632-952
HMMPanther	PTHR11468:SF0	SUBFAMILY	0	89-973
Seg	seg	seg	NA	195-206 528-542 550-573
superfamily	SSF53756	UDP-Glycosyltransferase/glycogen	5e-285	78-973