Miyakogusa Predicted Gene
- Lj2g3v1058180.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9VJS8_LOTJA |
1625 |
98.6 |
98.6 |
(tr|B9VJS8) Starch synthase IIa OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G01180.1 |
978 |
64.6 |
76.3 |
| Symbols: AtSS2, SS2 | starch synthase 2 | chr3:62456-65678 REVERSE LENGTH=792 |
| Medicago |
Medtr6g012380.1 |
1109 |
71.8 |
79.8 |
| granule bound starch synthase | HC | chr6:3736016-3743000 | 20130731 |
| Soybean |
Glyma19g02690.1 |
1196 |
73.3 |
82.4 |
|
| LJGI |
gnl|LJGI|TC76460 |
971 |
100.0 |
100.0 |
similar to UniRef100_Q43093 Cluster: Granule-bound starch synthase 2, chloroplast precursor; n=1; Pisum sativum|Rep: Granule-bound starch synthase 2, chloroplast precursor - Pisum sativum (Garden pea), partial (9%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1058180.1 |
length: 792 aa. |
| IPR001296 |
Glycosyl transferase, family 1 |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0009058 |
biosynthetic process |
|
|
| HMMPfam |
PF00534 |
Glycos_transf_1 |
8.30000000000004E-17 |
603-745 |
| IPR011835 |
Glycogen/starch synthase, ADP-glucose type |
| Molecular Function |
GO:0009011 |
starch synthase activity |
|
|
| Biological Process |
GO:0009250 |
glucan biosynthetic process |
|
|
| HMMTigr |
TIGR02095 |
glgA |
0.0 |
301-785 |
| IPR013534 |
Starch synthase, catalytic domain |
| HMMPfam |
PF08323 |
Glyco_transf_5 |
3.6000000000000224E-67 |
302-545 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.2000G3DSA:3.40.50.2000 |
T[560-770] |
3.300000000168023E-76 |
|
| HMMPanther |
PTHR12526 |
PTHR12526 |
0.0 |
287-792 |
| HMMPanther |
PTHR12526:SF17 |
PTHR12526:SF17 |
0.0 |
287-792 |
| superfamily |
SSF53756 |
SSF53756 |
8.600063302139295E-108 |
301-785 |
- Wolf-PSORT
Lj2g3v1058180.1 nucl 4, pero 4, cyto 3, chlo 1, vacu 1, E.R. 1, E.R._vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1058180.1 |
|