Miyakogusa Predicted Gene

Lj2g3v1056990.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MW25_SOYBN 1224 75.6 82.4 (tr|K7MW25) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G55160.1 691 46.5 61.5 | Symbols: | unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr3:20445629-20452400 REVERSE LENGTH=2130

Medicago Medtr6g011760.1 1207 74.3 81.7 | death receptor interacting protein, putative | HC | chr6:3491307-3499869 | 20130731

Soybean Glyma19g02560.1 1191 75.8 82.6

LJGI gnl|LJGI|TC74868 1509 99.7 99.7 weakly similar to UniRef100_A7PMT3 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1056990.1 length: 818 aa.

IPR000357 HEAT

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF02985 HEAT 0.002 307-335

IPR011989 Armadillo-like helical

Gene3D G3DSA:1.25.10.10 no description 0.00012 428-575

IPR016024 Armadillo-type fold

Molecular Function GO:0005488 binding

superfamily SSF48371 ARM 2.3e-08 69-636

no_ID

HMMPanther PTHR14387 THADA/DEATH 5.8e-65 1-773

HMMPanther PTHR14387:SF0 SUBFAMILY 5.8e-65 1-773

Seg seg seg NA 232-244
506-518

Wolf-PSORT

Lj2g3v1056990.1 chlo 10, cyto 2, nucl 1, mito 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1056990.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MW25_SOYBN	1224	75.6	82.4	(tr\|K7MW25) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G55160.1	691	46.5	61.5	\| Symbols: \| unknown protein; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2428, death-receptor-like (InterPro:IPR019442); Has 357 Blast hits to 330 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 144; Fungi - 118; Plants - 50; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink). \| chr3:20445629-20452400 REVERSE LENGTH=2130
Medicago	Medtr6g011760.1	1207	74.3	81.7	\| death receptor interacting protein, putative \| HC \| chr6:3491307-3499869 \| 20130731
Soybean	Glyma19g02560.1	1191	75.8	82.6
LJGI	gnl\|LJGI\|TC74868	1509	99.7	99.7	weakly similar to UniRef100_A7PMT3 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)

IPR000357	HEAT
Lj2g3v1056990.1				length: 818 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF02985	HEAT	0.002	307-335
IPR011989	Armadillo-like helical
Gene3D	G3DSA:1.25.10.10	no description	0.00012	428-575
IPR016024	Armadillo-type fold
Molecular Function	GO:0005488	binding
superfamily	SSF48371	ARM	2.3e-08	69-636
no_ID
HMMPanther	PTHR14387	THADA/DEATH	5.8e-65	1-773
HMMPanther	PTHR14387:SF0	SUBFAMILY	5.8e-65	1-773
Seg	seg	seg	NA	232-244 506-518