Miyakogusa Predicted Gene

Lj2g3v1056970.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N643_SOYBN 1368 88.4 94.0 (tr|I1N643) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT1G69670.1 1191 77.4 87.2 | Symbols: CUL3B, ATCUL3B | cullin 3B | chr1:26202169-26204442 REVERSE LENGTH=732
Medicago Medtr6g011700.1 1241 80.7 89.3 | cullin 3B | HC | chr6:3449081-3453011 | 20130731
Soybean Glyma19g02540.1 1368 88.4 94.0  
LJGI gnl|LJGI|DC598281 991 100.0 100.0 similar to UniRef100_A7QEF5 Cluster: Chromosome chr1 scaffold_84, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_84, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1056970.1 length: 733 aa.
IPR001373 Cullin, N-terminal
method AccNumber shortName E-value location
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF00888 Cullin 4.4e-186 29-632
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 9e-37 562-630
631-733
IPR016158 Cullin homology
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMSmart SM00182 Cullin 4.6e-63 404-551
ProfileScan PS50069 CULLIN_2 54.585 374-602
superfamily SSF75632 Cullin 5.5e-96 368-642
IPR016159 Cullin repeat-like-containing domain
superfamily SSF74788 Cullin 1.7e-111 25-376
IPR019559 Cullin protein, neddylation domain
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Cellular Component GO:0031461 cullin-RING ubiquitin ligase complex    
Molecular Function GO:0031625 ubiquitin protein ligase binding    
HMMPfam PF10557 Cullin_Nedd8 5.2e-28 660-726
HMMSmart SM00884 Cullin 8.6e-35 660-727
no_ID  
Gene3D G3DSA:1.20.1310.10 no description 6.4e-41 26-147
150-266
269-377
378-480
Gene3D G3DSA:4.10.1030.10 no description 2.9e-25 491-556
HMMPanther PTHR11932 CULLIN 0 1-733
HMMPanther PTHR11932:SF23 CULLIN 0 1-733
Seg seg seg NA 151-167
superfamily SSF46785 "Winged 6e-31 642-733
Wolf-PSORT
Lj2g3v1056970.1	cyto 12, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1056970.1