Miyakogusa Predicted Gene

Lj2g3v1034880.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3T0C8_LOTJA 472 78.7 79.3 (tr|I3T0C8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G01220.1 177 44.9 60.3 | Symbols: ATHB20, HB20 | homeobox protein 20 | chr3:73599-75295 FORWARD LENGTH=286
Medicago Medtr6g011610.1 303 57.6 67.1 | homeobox associated leucine zipper protein | HC | chr6:3354792-3351266 | 20130731
Soybean Glyma13g05270.1 347 67.8 73.2  
LJGI gnl|LJGI|TC66153 1820 100.0 100.0 similar to UniRef100_A7QEH5 Cluster: Chromosome chr1 scaffold_84, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_84, whole genome shotgun sequence - Vitis vinifera (Grape), partial (50%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1034880.1 length: 305 aa.
IPR000047 Helix-turn-helix motif
method AccNumber shortName E-value location
Molecular Function GO:0000976 transcription regulatory region sequence-specific DNA binding    
FPrintScan PR00031 HTHREPRESSR 1.1e-05 132-141
141-157
IPR001356 Homeodomain
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
HMMPfam PF00046 Homeobox 1.4e-15 107-159
HMMSmart SM00389 Homeodomain 7.4e-18 104-165
ProfileScan PS50071 HOMEOBOX_2 17.086 101-161
IPR003106 Leucine zipper, homeobox-associated
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02183 HALZ 2.7e-13 161-201
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 4.5e-18 91-162
superfamily SSF46689 Homeodomain-like 1.6e-18 90-160
IPR017970 Homeobox, conserved site
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Molecular Function GO:0043565 sequence-specific DNA binding    
PatternScan PS00027 HOMEOBOX_1 NA 136-159
no_ID  
Coil coil coiled-coil NA 153-202
HMMPanther PTHR24326 FAMILY 2.7e-73 86-237
HMMPanther PTHR24326:SF74 SUBFAMILY 2.7e-73 86-237
Seg seg seg NA 6-18
47-67
91-104
214-228
Wolf-PSORT
Lj2g3v1034880.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1034880.1