Miyakogusa Predicted Gene

Lj2g3v1034670.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LXG7_SOYBN 528 61.3 69.7 (tr|K7LXG7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G11160.1 55.5 25.4 43.8 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Medicago Medtr6g011500.1 401 60.3 69.0 | WD domain, G-beta repeat protein | HC | chr6:3285166-3281035 | 20130731
Soybean Glyma13g05220.1 442 67.1 74.5  
LJGI gnl|LJGI|TC77812 1168 98.9 98.9 similar to UniRef100_A7PMN9 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1034670.1 length: 436 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0043 107-154
157-199
212-248
339-374
HMMSmart SM00320 WD40 0.017 103-155
156-199
208-248
290-328
337-375
ProfileScan PS50082 WD_REPEATS_2 9.071 163-200
215-257
344-384
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 7.3e-31 104-192
193-425
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 22.069 163-384
superfamily SSF50978 WD40 1.3e-40 107-419
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 235-249
362-376
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 9.4e-06 142-156
186-200
235-249
no_ID  
HMMPanther PTHR22844 F-BOX 4e-33 104-379
Seg seg seg NA 30-43
171-183
249-262
Wolf-PSORT
Lj2g3v1034670.1	nucl 5, chlo_mito 3.33333, mito 3, nucl_plas 3, chlo 2.5, cysk_nucl 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1034670.1