Miyakogusa Predicted Gene

Lj2g3v1034620.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1J7R6_SOYBN 1072 83.3 87.5 (tr|I1J7R6) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G28730.1 774 79.0 90.3 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group | chr3:10784954-10788498 FORWARD LENGTH=646

Medicago Medtr1g022345.2 1061 82.4 87.6 | FACT complex subunit SSRP1 | HC | chr1:7068528-7074782 | 20130731

Soybean Glyma01g33240.1 1071 83.3 87.5

LJGI gnl|LJGI|TC72950 1156 99.3 99.3 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1; Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia faba (Broad bean), partial (31%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1034620.1 length: 642 aa.

IPR000969 Structure-specific recognition protein

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Cellular Component GO:0005634 nucleus

FPrintScan PR00887 SSRCOGNITION 1.6e-68 220-236
242-258
265-281
330-343
357-375
375-392
401-417
417-435

IPR009071 High mobility group (HMG) box domain

Gene3D G3DSA:1.10.30.10 no description 6.7e-25 556-628

HMMPfam PF00505 HMG_box 5.9e-23 558-626

HMMSmart SM00398 high 5.8e-29 557-627

ProfileScan PS50118 HMG_BOX_2 20.158 558-626

superfamily SSF47095 HMG-box 1.2e-27 538-630

IPR011993 Pleckstrin homology-like domain

Gene3D G3DSA:2.30.29.30 no description 4.3e-27 6-107

IPR013719 Domain of unknown function DUF1747

HMMPfam PF08512 Rtt106 6.4e-23 350-441

IPR024954 SSRP1 domain

HMMPfam PF03531 SSrecog 3.6e-102 75-293

no_ID

HMMPanther PTHR13711 SWI/SNF-RELATED 3.7e-145 346-627

HMMPanther PTHR13711:SF85 STRUCTURE 3.7e-145 346-627

Seg seg seg NA 477-485
489-512
513-524
545-553

superfamily SSF50729 PH 1.8e-75 205-441

Wolf-PSORT

Lj2g3v1034620.1 nucl 11, cyto 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1034620.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1J7R6_SOYBN	1072	83.3	87.5	(tr\|I1J7R6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G28730.1	774	79.0	90.3	\| Symbols: ATHMG, SSRP1, NFD, HMG \| high mobility group \| chr3:10784954-10788498 FORWARD LENGTH=646
Medicago	Medtr1g022345.2	1061	82.4	87.6	\| FACT complex subunit SSRP1 \| HC \| chr1:7068528-7074782 \| 20130731
Soybean	Glyma01g33240.1	1071	83.3	87.5
LJGI	gnl\|LJGI\|TC72950	1156	99.3	99.3	similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1; Vicia faba\|Rep: FACT complex subunit SSRP1 - Vicia faba (Broad bean), partial (31%)

IPR000969	Structure-specific recognition protein
Lj2g3v1034620.1				length: 642 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Cellular Component	GO:0005634	nucleus
FPrintScan	PR00887	SSRCOGNITION	1.6e-68	220-236 242-258 265-281 330-343 357-375 375-392 401-417 417-435
IPR009071	High mobility group (HMG) box domain
Gene3D	G3DSA:1.10.30.10	no description	6.7e-25	556-628
HMMPfam	PF00505	HMG_box	5.9e-23	558-626
HMMSmart	SM00398	high	5.8e-29	557-627
ProfileScan	PS50118	HMG_BOX_2	20.158	558-626
superfamily	SSF47095	HMG-box	1.2e-27	538-630
IPR011993	Pleckstrin homology-like domain
Gene3D	G3DSA:2.30.29.30	no description	4.3e-27	6-107
IPR013719	Domain of unknown function DUF1747
HMMPfam	PF08512	Rtt106	6.4e-23	350-441
IPR024954	SSRP1 domain
HMMPfam	PF03531	SSrecog	3.6e-102	75-293
no_ID
HMMPanther	PTHR13711	SWI/SNF-RELATED	3.7e-145	346-627
HMMPanther	PTHR13711:SF85	STRUCTURE	3.7e-145	346-627
Seg	seg	seg	NA	477-485 489-512 513-524 545-553
superfamily	SSF50729	PH	1.8e-75	205-441