Miyakogusa Predicted Gene
- Lj2g3v1024160.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1N615_SOYBN |
769 |
81.0 |
89.8 |
(tr|I1N615) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G40010.1 |
540 |
58.2 |
73.8 |
| Symbols: AATP1 | AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514 |
| Medicago |
Medtr1g022250.1 |
777 |
81.4 |
88.4 |
| P-loop nucleoside triphosphate hydrolase superfamily protein | HC | chr1:6970364-6972206 | 20130731 |
| Soybean |
Glyma19g02190.1 |
769 |
81.0 |
89.8 |
|
| LJGI |
gnl|LJGI|TC64161 |
1181 |
100.0 |
100.0 |
similar to UniRef100_A7QCM2 Cluster: Chromosome chr12 scaffold_78, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr12 scaffold_78, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1024160.1 |
length: 456 aa. |
| IPR003593 |
AAA+ ATPase domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Molecular Function |
GO:0017111 |
nucleoside-triphosphatase activity |
|
|
| HMMSmart |
SM00382 |
ATPases |
1.3e-07 |
228-383 |
| IPR003959 |
ATPase, AAA-type, core |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00004 |
AAA |
6e-15 |
233-380 |
| IPR003960 |
ATPase, AAA-type, conserved site |
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| PatternScan |
PS00674 |
AAA |
NA |
351-369 |
| IPR025753 |
AAA-type ATPase, N-terminal domain |
| HMMPfam |
PF14363 |
AAA_assoc |
2.2e-27 |
22-118 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
6.2e-49 |
80-426 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
1.5e-36 |
211-377 |
| HMMPanther |
PTHR23070 |
BCS1 |
2.6e-231 |
1-451 |
| HMMPanther |
PTHR23070:SF1 |
AAA-TYPE |
2.6e-231 |
1-451 |
| Seg |
seg |
seg |
NA |
299-317 |
- Wolf-PSORT
Lj2g3v1024160.1 chlo 7, nucl 2, vacu 2, cyto 1, plas 1, pero 1, cysk_nucl 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1024160.1 |
|