Miyakogusa Predicted Gene

Lj2g3v1022980.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr2

Full length sequence(43247325 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7KK18_MEDTR 691 72.8 82.3 (tr|G7KK18) Mitochondrial chaperone BCS1 OS=Medicago truncatula GN=MTR_6g009540 PE=4 SV=1

TAIR_pep AT5G40010.1 559 59.0 73.1 | Symbols: AATP1 | AAA-ATPase 1 | chr5:16020218-16021762 REVERSE LENGTH=514

Medicago Medtr6g009540.1 688 72.7 82.4 | P-loop nucleoside triphosphate hydrolase superfamily protein | HC | chr6:2841276-2843419 | 20130731

Soybean Glyma18g48920.1 658 70.3 80.3

LJGI gnl|LJGI|TC61807 1794 97.4 97.4 similar to UniRef100_A7PMH8 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj2g3v1022980.1 length: 527 aa.

IPR003593 AAA+ ATPase domain

method AccNumber shortName E-value location

Molecular Function GO:0000166 nucleotide binding

Molecular Function GO:0017111 nucleoside-triphosphatase activity

HMMSmart SM00382 ATPases 3.2e-08 242-400

IPR003959 ATPase, AAA-type, core

Molecular Function GO:0005524 ATP binding

HMMPfam PF00004 AAA 6.4e-15 247-397

IPR003960 ATPase, AAA-type, conserved site

Molecular Function GO:0005524 ATP binding

PatternScan PS00674 AAA NA 368-387

IPR025753 AAA-type ATPase, N-terminal domain

HMMPfam PF14363 AAA_assoc 2.3e-24 27-123

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.7e-51 103-445

no_ID

Coil coil coiled-coil NA 449-503

Gene3D G3DSA:3.40.50.300 no description 1.6e-38 223-395

HMMPanther PTHR23070 BCS1 1.1e-258 3-502

HMMPanther PTHR23070:SF1 AAA-TYPE 1.1e-258 3-502

Seg seg seg NA 314-344
462-503

Wolf-PSORT

Lj2g3v1022980.1 cyto 7, chlo 4, nucl 3

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj2g3v1022980.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7KK18_MEDTR	691	72.8	82.3	(tr\|G7KK18) Mitochondrial chaperone BCS1 OS=Medicago truncatula GN=MTR_6g009540 PE=4 SV=1
TAIR_pep	AT5G40010.1	559	59.0	73.1	\| Symbols: AATP1 \| AAA-ATPase 1 \| chr5:16020218-16021762 REVERSE LENGTH=514
Medicago	Medtr6g009540.1	688	72.7	82.4	\| P-loop nucleoside triphosphate hydrolase superfamily protein \| HC \| chr6:2841276-2843419 \| 20130731
Soybean	Glyma18g48920.1	658	70.3	80.3
LJGI	gnl\|LJGI\|TC61807	1794	97.4	97.4	similar to UniRef100_A7PMH8 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (60%)

IPR003593	AAA+ ATPase domain
Lj2g3v1022980.1				length: 527 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0000166	nucleotide binding
Molecular Function	GO:0017111	nucleoside-triphosphatase activity
HMMSmart	SM00382	ATPases	3.2e-08	242-400
IPR003959	ATPase, AAA-type, core
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00004	AAA	6.4e-15	247-397
IPR003960	ATPase, AAA-type, conserved site
Molecular Function	GO:0005524	ATP binding
PatternScan	PS00674	AAA	NA	368-387
IPR025753	AAA-type ATPase, N-terminal domain
HMMPfam	PF14363	AAA_assoc	2.3e-24	27-123
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.7e-51	103-445
no_ID
Coil	coil	coiled-coil	NA	449-503
Gene3D	G3DSA:3.40.50.300	no description	1.6e-38	223-395
HMMPanther	PTHR23070	BCS1	1.1e-258	3-502
HMMPanther	PTHR23070:SF1	AAA-TYPE	1.1e-258	3-502
Seg	seg	seg	NA	314-344 462-503