Miyakogusa Predicted Gene

Lj2g3v1022350.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N5Z6_SOYBN 2205 79.9 85.7 (tr|I1N5Z6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G15020.2 1412 54.9 68.7 | Symbols: SNL2 | SIN3-like 2 | chr5:4859408-4865569 REVERSE LENGTH=1355
Medicago Medtr6g008970.1 2054 76.8 83.2 | paired amphipathic helix SIN3-like protein | HC | chr6:2536170-2526712 | 20130731
Soybean Glyma19g01920.1 2205 79.9 85.7  
LJGI gnl|LJGI|TC79665 971 98.3 98.3 similar to UniRef100_A7PMK0 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1022350.1 length: 1383 aa.
IPR003822 Paired amphipathic helix
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Gene3D G3DSA:1.20.1160.11 no description 5.7e-13 51-122
136-206
341-402
HMMPfam PF02671 PAH 1e-15 75-121
159-205
358-402
ProfileScan PS51477 PAH 12.137 53-123
137-207
332-405
superfamily SSF47762 PAH2 9.8e-16 132-207
48-123
331-405
IPR013194 Histone deacetylase interacting
HMMPfam PF08295 Sin3_corepress 8e-40 469-564
HMMSmart SM00761 Histone 4e-54 469-569
no_ID  
Coil coil coiled-coil NA 430-451
542-563
HMMPanther PTHR12346 SIN3B-RELATED 0 3-1377
Seg seg seg NA 35-47
278-294
532-543
667-678
1000-1016
1033-1046
1348-1377
Wolf-PSORT
Lj2g3v1022350.1	nucl 11, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1022350.1