Miyakogusa Predicted Gene
- Lj2g3v1020050.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9SHS2_RICCO |
150 |
84.6 |
91.0 |
(tr|B9SHS2) DNA-directed RNA polymerase OS=Ricinus communis GN=RCOM_0620590 PE=3 SV=1 |
| TAIR_pep |
AT5G45140.1 |
140 |
76.5 |
85.2 |
| Symbols: NRPC2 | nuclear RNA polymerase C2 | chr5:18247416-18257713 REVERSE LENGTH=1161 |
| Medicago |
Medtr8g023445.1 |
144 |
79.0 |
87.7 |
| DNA-directed RNA polymerase | LC | chr8:8458667-8488921 | 20130731 |
| Soybean |
Glyma07g14980.1 |
137 |
77.8 |
82.7 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v1020050.1 |
length: 82 aa. |
| IPR007645 |
RNA polymerase Rpb2, domain 3 |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| HMMPfam |
PF04565 |
RNA_pol_Rpb2_3 |
1.5e-08 |
1-26 |
| IPR015712 |
DNA-directed RNA polymerase, subunit 2 |
| Molecular Function |
GO:0003899 |
DNA-directed RNA polymerase activity |
|
|
| Biological Process |
GO:0006351 |
transcription, DNA-dependent |
|
|
| Molecular Function |
GO:0032549 |
ribonucleoside binding |
|
|
| HMMPanther |
PTHR20856 |
DNA-DIRECTED |
8.6e-36 |
1-78 |
| no_ID |
|
| Gene3D |
G3DSA:3.90.1100.10 |
no description |
2e-09 |
1-36 |
| HMMPanther |
PTHR20856:SF8 |
DNA-DIRECTED |
8.6e-36 |
1-78 |
| superfamily |
SSF64484 |
beta |
1.2e-16 |
1-78 |
- Wolf-PSORT
Lj2g3v1020050.1 cyto 8.5, cyto_E.R. 5, chlo 2, nucl 1, cysk 1, golg 1, chlo_mito 1, cysk_nucl 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v1020050.1 |
|