Miyakogusa Predicted Gene

Lj2g3v1014400.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M022_SOYBN 3075 71.8 78.7 (tr|I1M022) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G01460.1 1592 44.0 59.3 | Symbols: MBD9, ATMBD9 | methyl-CPG-binding domain 9 | chr3:173316-182038 FORWARD LENGTH=2176
Medicago Medtr6g007650.1 2891 68.4 77.1 | methyl-CpG-binding domain protein | HC | chr6:1748720-1735614 | 20130731
Soybean Glyma13g23910.1 2925 70.0 76.9  
LJGI gnl|LJGI|TC79833 2058 99.9 99.9 similar to UniRef100_A7PMB8 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v1014400.1 length: 2231 aa.
IPR001487 Bromodomain
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.20.920.10 no description 5.4e-11 1135-1244
HMMPfam PF00439 Bromodomain 4.4e-05 1178-1233
ProfileScan PS50014 BROMODOMAIN_2 9.049 1180-1228
superfamily SSF47370 Bromodomain 8.7e-11 1121-1244
IPR001739 Methyl-CpG DNA binding
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF01429 MBD 1e-10 264-317
ProfileScan PS50982 MBD 9.627 263-330
IPR001965 Zinc finger, PHD-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00249 PHD 9.2e-14 85-134
1289-1335
IPR003888 FY-rich, N-terminal
Cellular Component GO:0005634 nucleus    
HMMPfam PF05964 FYRN 4.6e-05 412-458
ProfileScan PS51542 FYRN 18.705 406-459
IPR011011 Zinc finger, FYVE/PHD-type
superfamily SSF57903 FYVE/PHD 1.2e-12 1272-1353
49-134
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.4e-17 86-139
1289-1339
IPR019786 Zinc finger, PHD-type, conserved site
PatternScan PS01359 ZF_PHD_1 NA 86-133
1290-1334
IPR019787 Zinc finger, PHD-finger
Molecular Function GO:0005515 protein binding    
HMMPfam PF00628 PHD 3.1e-12 86-134
1289-1335
ProfileScan PS50016 ZF_PHD_2 10.202 83-136
1287-1337
no_ID  
HMMPanther PTHR10615 HISTONE 1.5e-35 904-1409
HMMPanther PTHR10615:SF70 MBD9 1.5e-35 904-1409
Seg seg seg NA 10-37
69-80
89-103
704-714
907-918
975-988
1022-1033
1124-1137
1970-1988
2215-2227
Wolf-PSORT
Lj2g3v1014400.1	nucl 10, cyto 2, vacu 1, E.R. 1, E.R._vacu 1, cyto_pero 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v1014400.1