Miyakogusa Predicted Gene

Lj2g3v0947360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N5H9_SOYBN 1424 77.0 84.9 (tr|I1N5H9) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT5G14580.1 1135 59.5 72.8 | Symbols: | polyribonucleotide nucleotidyltransferase, putative | chr5:4697612-4703013 REVERSE LENGTH=991
Medicago Medtr6g005460.1 1328 71.9 80.2 | polyribonucleotide nucleotidyltransferase | HC | chr6:766009-755137 | 20130731
Soybean Glyma19g00280.1 1407 76.2 83.8  
LJGI gnl|LJGI|TC64091 1374 100.0 100.0 similar to UniRef100_A7PM62 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0947360.1 length: 953 aa.
IPR001247 Exoribonuclease, phosphorolytic domain 1
method AccNumber shortName E-value location
HMMPfam PF01138 RNase_PH 2.6e-22 38-167
348-481
IPR003029 Ribosomal protein S1, RNA-binding domain
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00575 S1 7.2e-12 650-720
ProfileScan PS50126 S1 17.051 652-720
IPR004088 K Homology domain, type 1
Molecular Function GO:0003723 RNA binding    
HMMPfam PF00013 KH_1 1.7e-07 587-633
ProfileScan PS50084 KH_TYPE_1 8.911 583-619
IPR012162 Polyribonucleotide nucleotidyltransferase
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004654 polyribonucleotide nucleotidyltransferase activity    
Biological Process GO:0006402 mRNA catabolic process    
HAMAP MF_01595 PNPase 25.092 27-723
HMMPanther PTHR11252 POLYRIBONUCLEOTIDE 0 1-766
HMMTigr TIGR03591 polynuc_phos: 2e-235 35-721
IPR012340 Nucleic acid-binding, OB-fold
Gene3D G3DSA:2.40.50.140 no description 0.00069 654-726
875-936
superfamily SSF50249 Nucleic 4.2e-07 649-738
880-945
IPR015847 Exoribonuclease, phosphorolytic domain 2
HMMPfam PF03725 RNase_PH_C 1e-08 170-232
485-561
superfamily SSF55666 Ribonuclease 7.6e-23 475-582
168-261
IPR015848 Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type
Molecular Function GO:0000175 3'-5'-exoribonuclease activity    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
Gene3D G3DSA:1.10.10.400 no description 5.5e-23 249-339
HMMPfam PF03726 PNPase 2.1e-17 266-345
superfamily SSF46915 Polynucleotide 2.8e-24 249-351
IPR020568 Ribosomal protein S5 domain 2-type fold
superfamily SSF54211 Ribosomal 6.2e-43 21-167
339-489
IPR022967 RNA-binding domain, S1
HMMSmart SM00316 Ribosomal 0.017 650-720
883-946
IPR027408 PNPase/RNase PH domain
Gene3D G3DSA:3.30.230.70 no description 1.8e-85 29-248
340-574
no_ID  
Gene3D G3DSA:3.30.1370.10 no description 5.9e-10 585-653
Seg seg seg NA 166-182
320-333
823-836
899-910
superfamily SSF54791 Eukaryotic 1.6e-10 576-679
Wolf-PSORT
Lj2g3v0947360.1	chlo 6.5, chlo_mito 6, mito 4.5, nucl 1, cyto 1, plas 1, cyto_nucl 1, nucl_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0947360.1