Miyakogusa Predicted Gene

Lj2g3v0934150.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KQ08_MEDTR 287 63.3 78.8 (tr|G7KQ08) Coatomer protein complex subunit alpha OS=Medicago truncatula GN=MTR_6g005220 PE=4 SV=1
TAIR_pep AT3G27640.1 207 58.5 73.9 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:10232307-10235467 FORWARD LENGTH=535
Medicago Medtr6g005220.1 287 63.3 78.8 | denticleless-like protein | HC | chr6:664598-660140 | 20130731
Soybean Glyma19g00350.1 282 66.0 80.9  
LJGI gnl|LJGI|TC75541 56.0 96.9 96.9 similar to UniRef100_A7PM41 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0934150.2 length: 226 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.6e-05 133-167
HMMSmart SM00320 WD40 0.00052 34-79
92-125
128-168
ProfileScan PS50082 WD_REPEATS_2 9.840 135-177
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.8e-21 2-168
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 14.002 1-177
superfamily SSF50978 WD40 5e-21 2-168
no_ID  
HMMPanther PTHR22852 LETHAL(2)DENTICLELESS 1.4e-52 1-187
Wolf-PSORT
Lj2g3v0934150.2	nucl 12, cyto 1, extr 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0934150.2