Miyakogusa Predicted Gene

Lj2g3v0933930.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K1K6_SOYBN 1400 76.5 83.7 (tr|I1K1K6) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G27700.2 603 42.0 58.5 | Symbols: | zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein | chr3:10257681-10261330 REVERSE LENGTH=908
Medicago Medtr6g004970.1 1295 70.9 79.4 | zinc finger CCCH domain protein | HC | chr6:534944-543221 | 20130731
Soybean Glyma19g00510.1 1292 75.3 82.1  
LJGI gnl|LJGI|TC63418 1518 99.7 99.7 similar to UniRef100_A7PM49 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (18%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0933930.1 length: 916 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMSmart SM00360 RNA 0.83 477-544
759-829
ProfileScan PS50102 RRM 13.294 476-548
IPR000571 Zinc finger, CCCH-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00356 zinc 7.6e-05 227-253
ProfileScan PS50103 ZF_C3H1 12.746 226-254
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 4.7e-05 468-553
770-830
no_ID  
Coil coil coiled-coil NA 620-666
HMMPanther PTHR14398 RNA 4.4e-70 21-891
HMMPfam PF14259 RRM_6 5.2e-12 478-542
Seg seg seg NA 29-45
104-116
superfamily SSF54928 RNA-binding 1.7e-17 475-840
Wolf-PSORT
Lj2g3v0933930.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0933930.1