Miyakogusa Predicted Gene

Lj2g3v0932680.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SPI3_LOTJA 451 80.3 80.3 (tr|I3SPI3) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G40490.1 275 67.2 80.4 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr5:16225483-16227423 FORWARD LENGTH=423
Medicago Medtr6g004810.1 403 69.5 73.3 | RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr6:438661-434987 | 20130731
Soybean Glyma05g09040.1 379 84.5 88.1  
LJGI gnl|LJGI|TC59319 1844 100.0 100.0 similar to UniRef100_A7PM30 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (79%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0932680.1 length: 310 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 4.4e-19 47-114
135-204
HMMSmart SM00360 RNA 1.7e-23 46-117
134-207
ProfileScan PS50102 RRM 14.761 133-211
45-121
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 9.5e-25 25-123
128-217
no_ID  
HMMPanther PTHR24012 FAMILY 2e-108 44-302
HMMPanther PTHR24012:SF27 SUBFAMILY 2e-108 44-302
Seg seg seg NA 207-222
243-287
superfamily SSF54928 RNA-binding 5.2e-40 43-218
Wolf-PSORT
Lj2g3v0932680.1	nucl 6, cyto 5, plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0932680.1