Miyakogusa Predicted Gene

Lj2g3v0866690.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KIB7_SOYBN 1820 70.8 81.0 (tr|K7KIB7) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G43920.2 1032 44.9 60.4 | Symbols: DCL3, ATDCL3 | dicer-like 3 | chr3:15753548-15760830 FORWARD LENGTH=1580
Medicago Medtr3g105390.1 1790 68.3 77.7 | endoribonuclease dicer-like protein | HC | chr3:48587251-48600607 | 20130731
Soybean Glyma04g06060.1 1796 69.2 79.3  
LJGI gnl|LJGI|BP042852 922 100.0 100.0 weakly similar to UniRef100_A7P4V9 Cluster: Chromosome chr4 scaffold_6, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr4 scaffold_6, whole genome shotgun sequence - Vitis vinifera (Grape), partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0866690.1 length: 1310 aa.
IPR000999 Ribonuclease III domain
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004525 ribonuclease III activity    
Biological Process GO:0006396 RNA processing    
Gene3D G3DSA:1.10.1520.10 no description 2e-43 806-853
879-1044
HMMPfam PF00636 Ribonuclease_3 1.1e-21 704-836
916-1024
HMMSmart SM00535 Ribonuclease 8.4e-34 686-859
895-1048
PatternScan PS00517 RNASE_3_1 NA 916-924
ProfileScan PS50142 RNASE_3_2 24.780 880-1025
667-839
superfamily SSF69065 RNase 5e-31 876-1053
657-857
IPR001159 Double-stranded RNA-binding
Molecular Function GO:0003725 double-stranded RNA binding    
ProfileScan PS50137 DS_RBD 8.834 1096-1119
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.2e-16 80-137
HMMSmart SM00490 helicase 1.4e-15 46-141
ProfileScan PS51194 HELICASE_CTER 14.034 31-179
IPR003100 Argonaute/Dicer protein, PAZ
Molecular Function GO:0005515 protein binding    
HMMPfam PF02170 PAZ 1.1e-14 512-663
HMMSmart SM00949 no description 1e-06 507-666
ProfileScan PS50821 PAZ 19.426 530-642
superfamily SSF101690 PAZ 1.6e-14 528-645
IPR005034 Dicer double-stranded RNA-binding fold
Molecular Function GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters    
HMMPfam PF03368 dsRNA_bind 5.3e-26 209-296
ProfileScan PS51327 DICER_DSRBF 28.211 208-298
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7e-21 21-163
no_ID  
Gene3D G3DSA:2.170.260.10 no description 4.9e-10 529-642
Gene3D G3DSA:3.40.50.300 no description 1.2e-23 19-158
HMMPanther PTHR14950 HELICASE-RELATED 0 1-1141
HMMPanther PTHR14950:SF1 HELICASE-RELATED 0 1-1141
Seg seg seg NA 627-635
677-692
968-980
superfamily SSF54768 dsRNA-binding 0.0016 1006-1151
1202-1308
Wolf-PSORT
Lj2g3v0866690.1	nucl 4.5, chlo 4, cysk_nucl 3, cyto 1, mito 1, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0866690.1