Miyakogusa Predicted Gene

Lj2g3v0855230.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1J4J3_SOYBN 1875 84.2 87.6 (tr|I1J4J3) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT3G28345.1 1056 47.9 68.4 | Symbols: | ABC transporter family protein | chr3:10593921-10598775 REVERSE LENGTH=1240
Medicago Medtr6g088670.1 1800 80.9 85.9 | ABC transporter B family protein | HC | chr6:33795204-33784137 | 20130731
Soybean Glyma01g01160.1 1776 82.0 85.1  
LJGI gnl|LJGI|GO036110 56.0 88.5 88.5 similar to UniRef100_A7Q0Z8 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0855230.1 length: 1112 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 1.7e-39 45-300
665-934
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 5.8e-20 394-519
ProfileScan PS50893 ABC_TRANSPORTER_2 24.016 352-588
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 3.9 379-571
1016-1111
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 1.4e-50 645-965
14-333
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 491-505
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 38.365 27-317
665-952
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 9.5e-27 352-574
989-1110
no_ID  
Gene3D G3DSA:1.20.1560.10 no description 1.4e-48 22-338
651-967
Gene3D G3DSA:3.40.50.300 no description 2.5e-34 352-584
988-1111
HMMPanther PTHR24221 FAMILY 0 16-1112
HMMPanther PTHR24221:SF24 SUBFAMILY 0 16-1112
Seg seg seg NA 183-188
462-469
498-506
608-625
640-659
708-721
1092-1108
Wolf-PSORT
Lj2g3v0855230.1	chlo 8, plas 5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0855230.1