Miyakogusa Predicted Gene

Lj2g3v0777050.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KNH7_MEDTR 1091 81.3 87.2 (tr|G7KNH7) DNA mismatch repair protein Msh6-2 OS=Medicago truncatula GN=MTR_6g086270 PE=3 SV=1
TAIR_pep AT3G24495.1 842 62.5 75.7 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109
Medicago Medtr6g086270.1 1123 82.2 88.3 | DNA mismatch repair protein msh6 | HC | chr6:32387897-32378956 | 20130731
Soybean Glyma09g32150.1 1067 80.1 85.2  
LJGI gnl|LJGI|TC73374 1072 100.0 100.0 similar to UniRef100_Q9SMV7 Cluster: DNA mismatch repair protein MSH6-2; n=1; Arabidopsis thaliana|Rep: DNA mismatch repair protein MSH6-2 - Arabidopsis thaliana (Mouse-ear cress), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0777050.1 length: 663 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF00488 MutS_V 4.4e-88 362-602
HMMSmart SM00534 ATPase 7.4e-107 402-598
PatternScan PS00486 DNA_MISMATCH_REPAIR_2 NA 483-499
IPR007696 DNA mismatch repair protein MutS, core
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05192 MutS_III 7.2e-36 120-337
HMMSmart SM00533 DNA-binding 3.5e-17 134-381
superfamily SSF48334 DNA 2.4e-31 117-296
IPR015536 DNA mismatch repair protein MutS-homologue MSH6
HMMPanther PTHR11361:SF31 MUTS 4.3e-199 1-633
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.7e-51 357-604
no_ID  
Gene3D G3DSA:1.10.1420.10 no description 2.1e-33 113-288
Gene3D G3DSA:3.40.50.300 no description 3.7e-65 363-602
HMMPanther PTHR11361 DNA 4.3e-199 1-633
Seg seg seg NA 210-228
244-250
304-315
Wolf-PSORT
Lj2g3v0777050.1	chlo 4, nucl 4, cyto 2, plas 2, chlo_mito 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0777050.1