Miyakogusa Predicted Gene

Lj2g3v0690150.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr2
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KQI6_SOYBN 1154 90.3 96.2 (tr|I1KQI6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G18060.1 961 75.4 87.5 | Symbols: | transducin family protein / WD-40 repeat family protein | chr3:6183880-6186788 FORWARD LENGTH=609
Medicago Medtr8g106820.1 1121 89.1 94.2 | transducin/WD40 repeat protein | HC | chr8:45099887-45094020 | 20130731
Soybean Glyma08g05640.1 1154 90.3 96.2  
LJGI gnl|LJGI|TC57509 1963 99.9 99.9 similar to UniRef100_Q1SN19 Cluster: WD40-like; n=1; Medicago truncatula|Rep: WD40-like - Medicago truncatula (Barrel medic), partial (54%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj2g3v0690150.1 length: 610 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.03 51-85
137-173
182-212
231-262
319-353
485-520
534-562
572-606
HMMSmart SM00320 WD40 0.12 47-86
90-134
135-175
178-217
220-262
314-354
438-476
481-520
525-563
567-606
ProfileScan PS50082 WD_REPEATS_2 9.573 54-95
185-226
230-271
488-520
531-572
575-610
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 6.9e-31 34-106
107-381
382-607
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 35.277 54-610
superfamily SSF50978 WD40 2e-35 26-355
316-607
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 249-263
no_ID  
HMMPanther PTHR19856 WD-REPEATCONTAINING 5.9e-233 1-608
Wolf-PSORT
Lj2g3v0690150.1	cyto 9, nucl 2, cysk 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj2g3v0690150.1