Miyakogusa Predicted Gene
- Lj2g3v0663770.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr2
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KJ56_SOYBN |
509 |
92.2 |
95.9 |
(tr|I1KJ56) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G56110.1 |
434 |
75.2 |
88.9 |
| Symbols: NOP56 | homolog of nucleolar protein NOP56 | chr1:20984544-20986893 REVERSE LENGTH=522 |
| Medicago |
Medtr4g103790.1 |
461 |
83.3 |
91.1 |
| NOP56-like pre RNA processing ribonucleoprotein | HC | chr4:42931644-42935374 | 20130731 |
| Soybean |
Glyma07g11560.1 |
509 |
92.2 |
95.9 |
|
| LJGI |
gnl|LJGI|TC67555 |
1520 |
100.0 |
100.0 |
similar to UniRef100_A7PHE5 Cluster: Chromosome chr17 scaffold_16, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_16, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj2g3v0663770.2 |
length: 271 aa. |
| IPR012974 |
NOP5, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF08156 |
NOP5NT |
3.5e-20 |
3-69 |
| IPR012976 |
NOSIC |
| HMMPfam |
PF08060 |
NOSIC |
1.3e-25 |
170-221 |
| HMMSmart |
SM00931 |
NOSIC |
6.5e-31 |
170-222 |
| no_ID |
|
| HMMPanther |
PTHR10894 |
NUCLEOLAR |
1.4e-132 |
2-256 |
| superfamily |
SSF89124 |
Nop |
3.9e-16 |
190-271 |
- Wolf-PSORT
Lj2g3v0663770.2 cyto 6, plas 3.5, E.R._plas 2.5, golg 2, chlo 1, mito 1, chlo_mito 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj2g3v0663770.2 |
|